These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence [TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTC-CCTTTCAACCAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG] [+] EMBL CB666869 [TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTC CCTTTCAACCAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCA ] [+] EMBL CB666827 [ ATGTTCATCATATGGTCTACTTT AAAAAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTACCCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG] consensusID : consensus_4071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TTTCGAAGCTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCATCTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGTCCAATGCAAAATGCTCCATCATCCTGTTAGGAGCATAAAGGGTATTGAACATG] [-] EMBL CA756543 [TTTCGAAGCTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCATCTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGTCCAATGCAAAATGCTCCATCATCCTGTTAGGAGCATAAAGGGTATTGAACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4071#0 TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTCCCTTTCAACCAATATGAA 60 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 TGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACC 120 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 TACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCT 180 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 CTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGC 240 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 TAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAG 300 consensus_4071#1 ----------------------------------------------------TTTCGAAG 8 ******** consensus_4071#0 CTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCAT 360 consensus_4071#1 CTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCAT 68 ****** ************************************* ************** consensus_4071#0 CTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTT 420 consensus_4071#1 CTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTT 128 ************ *********************************************** consensus_4071#0 GTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAA 480 consensus_4071#1 GTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGT-CCAA 187 ***************************** ****************** *** **** consensus_4071#0 TGCAAA-TGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATT 539 consensus_4071#1 TGCAAAATGCTCCATCATC-CTGTTAGGAGCATAAAGGGTATTGAACATG---------- 236 ****** ************ ** * * * * * * consensus_4071#0 CATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTG 599 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 CCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTG 659 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 CACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACT 719 consensus_4071#1 ------------------------------------------------------------ consensus_4071#0 TGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG 769 consensus_4071#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||