cluster # 4080

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Oryza sativa
cluster # 4080 cluster # 4080 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4080#0 length = 660 sequences # 2

consensus_4080#1 length = 645 sequences # 1

consensusID : consensus_4080#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGACACTGATCGATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATACCGTTGGTTCCTTCGATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCGTTAAAGTTGTCTCTTCCTAAACTCATTGTTAATGGCAATATTACGTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT]

[+] EMBL CA756508             [GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGACACTGATCGATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATACCGTTGGTTCCTTCGATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCGTTAAAGTTGTCTCTTCCTA                                                                            ]
[+] EMBL AK062469             [          acatactcGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATACATACATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGAGATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGTCTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACAGGGAGAGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGGCACCAGTGGTGATCAGTATATATAGTGGGCGTACGTGACACTGATCGATACGCACA CGTACTATACGTA TATATACGGTTATATATATA CGTAGGTAC  TCGAT CGCTCTCCCT CTCCTAAATAATC TA TCCCTCCGTT AAGTTGTC CTTCCGTAACTCATTGTTAATGGCAATATTACGTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT]




>consensus_4080#0
GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATA
CATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGA
GATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGT
CTCTGTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGA
CGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCGCGCGGCCCCACTTGGCG
GGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGGGGGTAGCTACACACGGAGAGG
GAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAAACCAATACCATAGATGCCAGG
CCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGACACTGATCGATCCGCACACCGT
ACTATACGTATTTTATCCCGTTATATATATACCGTTGGTTCCTTCGATCCGCTCTTCCTC
CTCCTAATAAATCTTATTCTCTCCGTTAAAGTTGTCTCTTCCTAAACTCATTGTTAATGG
CAATATTACGTACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT

consensusID : consensus_4080#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CGCTCGATCTCGTAGTAGACATCGCCTACACACATATACATATATTAATAACTAATCGTCCGACCGATCGATCGAGATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGTCTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGGCTGGAACATGGTGCAAGTGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGGAGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAAACCAATACCATAGATGCCATCATCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACTGATCACGATAAGCACACGTACTATACGTATATACGGTTATATATAAATACATAGGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGAATATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTCCGTTAAGTTGTCCTTCCATCATTGTTAATGGCAATATTATATAAT]

[+] EMBL AK063060             [CGCTCGATCTCGTAGTAGACATCGCCTACACACATATACATATATTAATAACTAATCGTCCGACCGATCGATCGAGATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGTCTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGGCTGGAACATGGTGCAAGTGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGGAGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAAACCAATACCATAGATGCCATCATCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACTGATCACGATAAGCACACGTACTATACGTATATACGGTTATATATAAATACATAGGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGAATATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTCCGTTAAGTTGTCCTTCCATCATTGTTAATGGCAATATTATATAAT]




>consensus_4080#1
CGCTCGATCTCGTAGTAGACATCGCCTACACACATATACATATATTAATAACTAATCGTC
CGACCGATCGATCGAGATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCC
GTTCGTCGTCATCGTCTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGA
GGTCGCGGCGGCGGAAGACGAAGATCAGATTGGTGGCGGTGGGCTGGAACATGGTGCAAG
TGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGG
AGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAA
ACCAATACCATAGATGCCATCATCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACT
GATCACGATAAGCACACGTACTATACGTATATACGGTTATATATAAATACATAGGCACAT
CTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGA
ATATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTC
CGTTAAGTTGTCCTTCCATCATTGTTAATGGCAATATTATATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4080#0      GCAGGAATTCGGCACGAGGCTCGATCTCGTAGTAGACATCGCTACACACACATATATATA 60
consensus_4080#1      -----------------CGCTCGATCTCGTAGTAGACATCGCC-----TACACACATATA 38
                                        ************************       *** * *****

consensus_4080#0      CATGCATTAATAACTAATCATCCGTCGATCGACGCCGGCCGGCGGCGACCGATCGATCGA 120
consensus_4080#1      CATATATTAATAACTAATCGTCCG-----------------------ACCGATCGATCGA 75
                      ***  ************** ****                       *************

consensus_4080#0      GATGGCGAGAAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCGTCGT 180
consensus_4080#1      GATGGCGAGGAGAGCGACCGCGCGCGGGGCTGGGCTGCCGGCGCCGTTCGTCGTCATCGT 135
                      ********* ********************************************* ****

consensus_4080#0      CTCTGT---GCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGA 237
consensus_4080#1      CTCTGTACTGCTGCTGCTGCTGCTGGGATCGCTGCCGCTCCACGAGGTCGCGGCGGCGGA 195
                      ******   ***************************************************

consensus_4080#0      AGACGAAGATCAGATTGGTGGCGGTGGTGGGCTGGAACATGGTGCG-------------- 283
consensus_4080#1      AGACGAAGATCAGATTGGTGGCGGTG---GGCTGGAACATGGTGCAAGTGCGTTAAAACC 252
                      **************************   ****************               

consensus_4080#0      ----CGCGGCCCCACTTGGCGGGGCTGCTGCAACCAGTATAAAGAGCGAGGGGAGCCAGG 339
consensus_4080#1      AGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAG------------GG 300
                          *********  ********* *********************            **

consensus_4080#0      GGGTAGCTACACACGGAGAGGGAGGTTTGGACCCTGCTTTCCTACGCAGCCATGCCACAA 399
consensus_4080#1      AGGTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAA 360
                       ************ **** ************** *** ****************** ***

consensus_4080#0      ACCAATACCATAGATGCCAGGCCCCAAGGGTGATCAAGATATATAGGGGGCGTACGTGAC 459
consensus_4080#1      ACCAATACCATAGATGCCAT-CATCATCACCACCAGTGGTGAGTATAGTGCGG--GTGAC 417
                      *******************  *  **           * *   **  * ***   *****

consensus_4080#0      ACTGATC--GATCCGCACACCGTACTATACGTATTTTATCCCGTTATATATATAC-CGTT 516
consensus_4080#1      ACTGATCACGATAAGCACAC-GTACTATACGTAT---ATACGGTTATATATAAATACATA 473
                      *******  ***  ****** *************   ** * ********** *  * * 

consensus_4080#0      GGTTCCTTCG-----------ATCCGCTCTTCCTCCTCCTAATAAATCTTATTCTCTCCG 565
consensus_4080#1      GGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTA 533
                      **  * *  *           *  ** **   ****  **  *  **  ** ** ***  

consensus_4080#0      TTAAAGT-TGTCTCTTCCTAAACTCATTGTTAATGGCAATATT---------ACGTACTC 615
consensus_4080#1      TCCCAGAATATAGCAACCTAAGC-CATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTA 592
                      *   **  * *  *  ***** * ***  *   * ** *****         * * * * 

consensus_4080#0      CCTCCGTATTTTAATGTATGACGCCGTTGACTTTTTAAGACCATT--------- 660
consensus_4080#1      TATCCCTCCGTTAAGTTGTCCTTCCATC-ATTGTTAATGGCAATATTATATAAT 645
                        *** *   ****  * *    ** *  * * ** * * * **