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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2140 fasta sequence
[GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAAAAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTGTACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCCCGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAGGCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGTATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACATCCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGACCCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCATCCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAGGACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTTCTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAGTGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGTGCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGCTTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGATTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGCTTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCAGGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGCTTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCGTCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCGTTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAATATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATCTTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTGTCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTCTTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCATGGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAATCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTTCGGGCACTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG]
[+] EMBL AK105734 [GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAAAAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTGTACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCCCGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAGGCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGTATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACATCCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGACCCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCATCCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAGGACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTTCTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAGTGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGTGCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGCTTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGATTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGCTTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCAGGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGCTTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCGTCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCGTTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAATATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATCTTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTGTCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTCTTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCATGGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAATCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTTCGGGCACTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG]
consensusID : consensus_409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATNGTCTATAGAAATAATAATAGGGGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCCTTATTTTGTGTATCGCTGTAAAAAAAAAAAA]
[-] EMBL CA760106 [GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTGGGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTGACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGAATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACTTGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGTCCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGCAGGGATTCTCATNGTCTATAGAAATAATAATAGGGGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCACACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATGGAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCTCTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAATCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCCTTATTTTGTGTATCGCTGTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_409#0 GGCCCATACATATACTCCTACTTTTAAGTAGAACTAAAGAGAAAAAAAAAGGAAGGAAAA 60
consensus_409#1 ------------------------------------------------------------
consensus_409#0 AAAAAAGAGAAGAAGCTCGTCGTCAATCGTCATCGCTGGTCACAAGTCCTCTCTTCCTTG 120
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TACTCTCAAGTCCTCTCTTCCTCCCCCGCCCTCCGATCCCCAAGTGCCCTTGTGCTACCC 180
consensus_409#1 ------------------------------------------------------------
consensus_409#0 CGCGCCGCGCGCCGTCACAGTCGACGCTTCCGCCGCCGCCGCCGTCGTCGTCGGCGGCAG 240
consensus_409#1 ------------------------------------------------------------
consensus_409#0 GCAGCTCATGGAGGTTGCTACTCCCAATAATAACGCTCACTAGGTCATTGATGAACTAGT 300
consensus_409#1 ------------------------------------------------------------
consensus_409#0 ATCCAATGATGATGATGACGATAGGCTCAGCGCCCTCCCAAATGAAATTTCGATCTACAT 360
consensus_409#1 ------------------------------------------------------------
consensus_409#0 CCTCCAACGCCTGCCGCTGCGCACTTCAGCACAGACCACCATCCTCGCAAGGCGATGGAC 420
consensus_409#1 ------------------------------------------------------------
consensus_409#0 CCATCTTTTCCCATCCATGACACATCTCAAAATAGATATCAATGAATTTGTACCACGCAT 480
consensus_409#1 ------------------------------------------------------------
consensus_409#0 CCTCACTAGGCACAATGTGGCTCGAAGCATGGCCATGTCGTGGTACACCCAAGCACTAAG 540
consensus_409#1 ------------------------------------------------------------
consensus_409#0 GACATTGCTAGCTCCTACAATTGACCCTGATCGGACCATAAGGACCATGCATCTACGCTT 600
consensus_409#1 ------------------------------------------------------------
consensus_409#0 CTACCCCACAGACTCATACCTGCTCTCCATTGCCCGCATGGTCGACGATGCGGTTCAGAG 660
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TGCCAGTGCCAGCAAGATTGAGGTCCTTGACTTTGCCATTCTGAATGAGGTGTCCGAGGT 720
consensus_409#1 ------------------------------------------------------------
consensus_409#0 GCACTGCACCGAGAAACAGATGTCACGATACGGGCGACGCTTCATGTCCTTCTTTCAGGC 780
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTGCCCCAATGGATTCAGGTGCCTAACAAGCCTCTCTCTATGGGCCCTCAGGTTTCGGGA 840
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTCAGATATCCCAAGCCTACTAGGCTCCTGCCACCAGCTGCAGCACCTCCTTCTACGGGC 900
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTTGCGATAGCGGTCGCAACTCTGTGCTCAAGATTGACGCATCACCATGCTCACAGCTCA 960
consensus_409#1 ------------------------------------------------------------
consensus_409#0 GGACATTGAGGATGATCTTCTGCAGTTACATCAAGGTTGAACTCGTCCACGTTCCAAAGC 1020
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTGAATCAGTGGATTGTGATACATGGGTGGGTGTCAACCCTCCTGTTTATTTTGGTTGCG 1080
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TCCCACTGCTTGACAAGATACGCTTCTCTTCCACCTGCCTTAAGATGCAGCAACCATTCG 1140
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTCTGAGCAGCTGGCTGTCCACTGTGCCAGCTCTAACTAGTTTGCATCTGGACTAACAAT 1200
consensus_409#1 ------------------------------------------------------------
consensus_409#0 ATGAGATGGTTTGGATCATGCCAGAAGAGCCGAAGAAACTATTCCCCATATTTCGCAATC 1260
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TTAAGGATGTATATCTTTACAACATTAGTAATGACAGTGGCCTCGACTGGACACTGTTTG 1320
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TCCTTGAAGGCGCACCCTCCCTCAAGAGTTTTCATGTTAAGATATCTCACCACATATGTG 1380
consensus_409#1 -----GAAGGCGCACCCTCCCTCAAGAGTNTTCATGTTAAGATATCTCACCACATATGTG 55
************************ ******************************
consensus_409#0 GGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTG 1440
consensus_409#1 GGGGGGATGGTTTTGAGCACAATGCTGGCAGTAGTAATGTTGTGTGGGAAGCATCATCTG 115
************************************************************
consensus_409#0 ACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTTTGAGGCAGAAGAGA 1500
consensus_409#1 ACATCATCAAGCATAAAAACTTGAGGTTGTTGGATATAATAGGCTNTGAGACAGAAGAGA 175
********************************************* **** *********
consensus_409#0 ATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACT 1560
consensus_409#1 ATCTGATCAAGTACATAAGGCTCGCCATTCAGCGAGCTATCGCTTTACAGAGAATTCACT 235
************************************************************
consensus_409#0 TGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGT 1620
consensus_409#1 TGCATGAGAAGGAACCATGTGAAGACTGCGATGATATTTATCTCAATACGCCATCTCTGT 295
************************************************************
consensus_409#0 CCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGC 1680
consensus_409#1 CCAGAACTAGATTCCCTAACAATGAGCAAGAGAAGGATCTACTAAGAGAGCAACTCCTGC 355
************************************************************
consensus_409#0 AGGGATTCTCATCGTCTATAGAAATAATAATAGGTTGTTACTAGTAATTGTTAGATTTTC 1740
consensus_409#1 AGGGATTCTCATNGTCTATAGAAATAATAATAGG-------------------------- 389
************ *********************
consensus_409#0 TTTTCATGCCAGTAATTGTTCTAAACATGAAAATTTTGAATTTTGATATTCTTATATCAT 1800
consensus_409#1 ------------------------------------------------------------
consensus_409#0 GGGGTTCAGAATGCAAAGTTTCCTGTAATTTCAAAATTCTTTACATTATTGATTCTAAAA 1860
consensus_409#1 ------------------------------------------------------------
consensus_409#0 TCCCAAAATTTGAAATGCCAAGCAGGGGAAGACTGATTTTTTT-CGGGCACTCAGTGCCA 1919
consensus_409#1 --------------------------GGAAGACTGATTTTTTTTCGGGCAGTCAGTGCCA 423
***************** ****** *********
consensus_409#0 CACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTGAAGTTAGCTTGGTGGTGACATG 1979
consensus_409#1 CACAGGAGTCATCTGAAGGTGATGGCGTAGAAGATTTAAAGTTAGCTTGGTGGTGACATG 483
************************************* **********************
consensus_409#0 GAAGGTTTCTCTTTACGTAGAATTGACTACTACCTTTACCAACGGTATATAAGAATTTCT 2039
consensus_409#1 GAAGGTTTCTCTTTACGTAGAATTGATTACTACCTTTACCAACGGTATATAAGAATTTCT 543
************************** *********************************
consensus_409#0 CTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAA 2099
consensus_409#1 CTCTTAACTTACAGCGCACAAGAACTTTATTTGGGTCATATGGTACATTTCTTTGTTAAA 603
************************************************************
consensus_409#0 TCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTG------------------- 2140
consensus_409#1 TCCGGACATGTACTATGGCGTTGTTCTGATATTATGAGGTGATTGTCTTGTATTTCCCCC 663
*****************************************
consensus_409#0 -------------------------------
consensus_409#1 TTATTTTGTGTATCGCTGTAAAAAAAAAAAA 694
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||