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Oryza sativa
cluster # 4091 cluster # 4091       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4091#0 length = 2248 sequences # 3  

consensusID : consensus_4091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2248
fasta sequence
                              [GTCACGCGCGCTCGCGCGCAGGAATCTCACATGCTGCTGCTGCCGCTGCTGCTGCTGGTGTGGTGGTAGGTTCCAGCTCCGTGAACCGGCAAAAAAAATCCTCCCCGTCTCGCCGCCCGCCGCGCCCGCGCCGCGCTTCTAACCCCCACCCACCCACCCACCGCCCGCGCGCGCGCGCGCGTCGGTGCTCCACCTGCATCCTCTAATCCCCGCGTGGGCGGCGCCTTGTCTGATCTGGTTGCCAGCCACAGCTCGCGGGATCTCGCGTGTTTCGGTGGAGGGGATTGCGGCGCCGTGTGATTCGGCGATTGGGATGAGAGAGGGGAGGCGGCGGCTGCGGCGGTGGCGATGAGTGGCTCGGCGGCGACGCTGGGGATGCGGTGCGGGAGCTACGGCTCCCTCGCGTCGGCCGGCGGCGGGAGGAAGGGCGGGGGCAGGGGGTGGGGGTGGCGAGGCGGCGGGGAGAAGGAGCGGCTGCAGCTGCTCCACCGCGCGCTGCGGCTGGTGGGCCGCCGGAGGGCCGGGGTGCTGCTGCTGCTCGCCGCTGCCTCCGCCGCCGTCTTCTGCTCCATCTTCGCCGTCGTCAAAGATGATAATGCTTCAATGATCATTGCAAATAACTATGAAGTCGCAAATACCATACAGAACTCTGTGTATCCCAGCATGACAAGGCCTCTAATGACGTCCAGCGACCAATTCTCTGCTAGTAGCGTCAACAAAACTGAACTTCCAAATCGACTTCGTCTTTCATTTGCAAACTTTACACATCATCCTTGTGAAGGTTTCTCAGTTGCCCCTCCCCTGGTTGATCCGAAACGCACTGGACCACGACCATGTGATGTTTGCTACGTGCCTGTAGACCAGGCGTTCGCTCTTATGCCTCCACAACCTTCACCATCTCCTGTCCTTAAGAACTTAAGTTATGTATTTGAAGACAACATCACTGCAAATTTCTCAAATCAGGGCTCTGTATTTGGTGGGCATCCATCTCTGGAGCAGAGAAATAAATCTTTTGACATTAGTGAGTCTATGACTGTCCACTGTGGCTTTGTTAGAGGAAAGAAACCTGGCCAAGGTTCTGGATTTGATATCAATGATGATGATCTGTTAGAGATGGAGAAATGCCGTGAGCTGGTTGTAGCTTCTGCTATTTTTGGGAATTATGATATGATTCAACATCCAAGGAATGCCAGCGAATTTTCAAAGGCAAATGCATGTTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGTAAAAAATTCTAGCTCATTGTACAGAAACAACAAAGTTGGCTTATGGAGGCTAGTGGTCGTTCGAAATCTCCCATACGAAGATCCAAGGCGTACGGGGAAGATTCCTAAGCTTCTGCTCCATAGGCTTTTTCCAAATGTGAGATTTTCAGTTTGGATAGATGCAAAGCCTTAAGCTCGTTGTGGACCCTTATCTACTGCTTGAGAGGTTTTTGTGGAGGAAGAATGCTACTTTTGCTATCTCTCGGCACTACAAACGCTTTGATGTATTTGAAGAAGCAGAAGCTAATAAAGCTGCTGGCAAGTATGACAATGCATCAATTGATTACCAAATAGAGTTTTACCGAAATGAGGGCCTAACATATTATGCACCTGCTAAGCTTCCTATTACAAGTGATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGATCAAATTAGTTTCAGCACCGT-CCGGGACAAAATAAGGGCTAGAGTTGGCTGGATGCCTGAAATGTTCCTGGACTGCGAAAGACGCAA-CTTCGTTATTCAGGGATACCACAGGGAGCTACTAGAGC-AAAT-GATTGCA-TCC-GGTTGG-AAGCCCCC--TCCAA-CGGCC-AG-TGAA-CCAT-CTCGAAAACTCAGATTAGGTAGCAGGAAAGCTCCTCCATCAAAGAAGTCTTCCATGAAGCGGAAAAGAGTGAAGAAATCGAGCTCGCGGAGGCGTCTCCCCAAACCAATCACTAGGATGACTGATACTACTACCTGGCAAAAGTTGGGCGCATGATGATCCAGGGCTCTTTCCTCTTTGTTGACACAATTCACTTTGCTGGAGGGCGAGCTCATTCTATTAGGACACATACTTGTAGTTTTTTTTCCCTCCGACGAGATTTGTTCATAGTTTATTCTTGATTGTTGGTGTAAATAACAGCGAAAGCAATATAATCAAATATTTTCG]

[+] EMBL AK120867             [GTCACGCGCGCTCGCGCGCAGGAATCTCACATGCTGCTGCTGCCGCTGCTGCTGCTGGTGTGGTGGTAGGTTCCAGCTCCGTGAACCGGCAAAAAAAATCCTCCCCGTCTCGCCGCCCGCCGCGCCCGCGCCGCGCTTCTAACCCCCACCCACCCACCCACCGCCCGCGCGCGCGCGCGCGTCGGTGCTCCACCTGCATCCTCTAATCCCCGCGTGGGCGGCGCCTTGTCTGATCTGGTTGCCAGCCACAGCTCGCGGGATCTCGCGTGTTTCGGTGGAGGGGATTGCGGCGCCGTGTGATTCGGCGATTGGGATGAGAGAGGGGAGGCGGCGGCTGCGGCGGTGGCGATGAGTGGCTCGGCGGCGACGCTGGGGATGCGGTGCGGGAGCTACGGCTCCCTCGCGTCGGCCGGCGGCGGGAGGAAGGGCGGGGGCAGGGGGTGGGGGTGGCGAGGCGGCGGGGAGAAGGAGCGGCTGCAGCTGCTCCACCGCGCGCTGCGGCTGGTGGGCCGCCGGAGGGCCGGGGTGCTGCTGCTGCTCGCCGCTGCCTCCGCCGCCGTCTTCTGCTCCATCTTCGCCGTCGTCAAAGATGATAATGCTTCAATGATCATTGCAAATAACTATGAAGTCGCAAATACCATACAGAACTCTGTGTATCCCAGCATGACAAGGCCTCTAATGACGTCCAGCGACCAATTCTCTGCTAGTAGCGTCAACAAAACTGAACTTCCAAATCGACTTCGTCTTTCATTTGCAAACTTTACACATCATCCTTGTGAAGGTTTCTCAGTTGCCCCTCCCCTGGTTGATCCGAAACGCACTGGACCACGACCATGTGATGTTTGCTACGTGCCTGTAGACCAGGCGTTCGCTCTTATGCCTCCACAACCTTCACCATCTCCTGTCCTTAAGAACTTAAGTTATGTATTTGAAGACAACATCACTGCAAATTTCTCAAATCAGGGCTCTGTATTTGGTGGGCATCCATCTCTGGAGCAGAGAAATAAATCTTTTGACATTAGTGAGTCTATGACTGTCCACTGTGGCTTTGTTAGAGGAAAGAAACCTGGCCAAGGTTCTGGATTTGATATCAATGATGATGATCTGTTAGAGATGGAGAAATGCCGTGAGCTGGTTGTAGCTTCTGCTATTTTTGGGAATTATGATATGATTCAACATCCAAGGAATGCCAGCGAATTTTCAAAGGCAAATGCATGTTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGTAAAAAATTCTAGCTCATTGTACAGAAACAACAAAGTTGGCTTATGGAGGCTAGTGGTCGTTCGAAATCTCCCATACGAAGATCCAAGGCGTACGGGGAAGATTCCTAAGCTTCTGCTCCATAGGCTTTTTCCAAATGTGAGATTTTCAGTTTGGATAGATGCAAAGCCTTAAGCTCGTTGTGGACCCTTATCTACTGCTTGAGAGGTTTTTGTGGAGGAAGAATGCTACTTTTGCTATCTCTCGGCACTACAAACGCTTTGATGTATTTGAAGAAGCAGAAGCTAATAAAGCTGCTGGCAAGTATGACAATGCATCAATTGATTACCAAATAGAGTTTTACCGAAATGAGGGCCTAACATATTATGCACCTGCTAAGCTTCCTATTACAAGTGATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGATCAAATTAGTTTCAGCACCGT CCGGGACAAAATAAGGGCTAGAGTTGGCTGGATGCCTGAAATGTTCCTGGACTGCGAAAGACGCAA CTTCGTTATTCAGGGATACCACAGGGAGCTACTAGAGC AAAT GATTGCA TCC GGTTGG AAGCCCCC  TCCAA CGGCC AG TGAA CCAT CTCGAAAACTCAGATTAGGTAGCAGGAAAGCTCCTCCATCAAAGAAGTCTTCCATGAAGCGGAAAAGAGTGAAGAAATCGAGCTCGCGGAGGCGTCTCCCCAAACCAATCACTAGGATGACTGATACTACTACCTGGCAAAAGTTGGGCGCATGATGATCCAGGGCTCTTTCCTCTTTGTTGACACAATTCACTTTGCTGGAGGGCGAGCTCATTCTATTAGGACACATACTTGTAGTTTTTTTTCCCTCCGACGAGATTTGTTCATAGTTTATTCTTGATTGTTGGTGTAAATAACAGCGAAAGCAATATAATCAAATATTTTCG]
[+] EMBL CA764824             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aggggGATCCAAGGCGTACGGGGAAGATTCCTAAGCTTCTGCTCCATAGGCTTTTTCCAAATGTGAGATTTTCAGTTTGGATAGATGCAAAG CTTAAGCTCGTTGTGGACCCTTATCTACTACTTGAGAGGTTTTTGTGGAGGAAGAATGCTACTTTTGCTATCTCTCGGCACTACAAACGCTTTGATGTATTTGAAGAAGCAGAAGCTAATAAAGCTGCTGGCAAGTATGACAATGCATCAATTGATTACCAAATAGAGTTTTACCGAAATGAGGGCCTAACATATTATGCACCTGCTAAGCTTCCTATTACAAGTGATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGTCTTTGGTTCAATGAAGTTGACCGTTCCACCTCCAGGGATCAAATTAGTTTCAGCACCGTCCCGGGACAAAATAAGGGCTAGAGTTGGCTGGATGCCTGAAATGTTCCTGGACTGCGAAAGACGCAACCTTCGTTATTCAGGGATACCGCAGGGAGCTACTAGAGCAAAATGGATTGCATTCCGGGTTGGAAAGCCCCCCTTNCAANGGGCCNAGTTGAANCCATCCTCCAAA                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK059402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAAGAATGCTACTTTTGCTATCTCTCGGCACTACAAACGCTTTGATGTATTTGAAGAAGCAGAAGCTAATAAAGCTGCTGGCAAGTATGACAATGCATCAATTGATTACCAAATAGAGTTTTACCGAAATGAGGGCCTAACATATTATGCACCTGCTAAGCTTCCTATTACAAGTGATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGATCAAATTAGTTTCAGCACCGT CCGGGACAAAATAAGGGCTAGAGTTGGCTGGATGCCTGAAATGTTCCTGGACTGCGAAAGACGCAA CTTCGTTATTCAGGGATACCACAGGGAGCTACTAGAGC AAAT GATTGCA TCC GGTTGG AAGCCCCC  TCCAA CGGCC AG TGAA CCAT CTCGAAAACTCAGATTAGGTAGCAGGAAAGCTCCTCCATCAAAGAAGTCTTCCATGAAGCGGAAAAGAGTGAAGAAATCGAGCTCGCGGAGGCGTCTCCCCAAACCAATCACTAGGATGACTGATACTACTACCTGGCAAAAGTTGGGCGCATGATGATCCAGGGCTCTTTCCTCTTTGTTGACACAATTCACTTTGCTGGAGGGCGAGCTCATTCTATTAGGACACATACTTGTAGTTTTTTTTCCCTCCGACGAGATTTGTTCATAGTTTATTCTTGATTGTTGGTGTAAATAACAGCGAAAGCAATATAATCAAATATTTTCG]


>consensus_4091#0 GTCACGCGCGCTCGCGCGCAGGAATCTCACATGCTGCTGCTGCCGCTGCTGCTGCTGGTG TGGTGGTAGGTTCCAGCTCCGTGAACCGGCAAAAAAAATCCTCCCCGTCTCGCCGCCCGC CGCGCCCGCGCCGCGCTTCTAACCCCCACCCACCCACCCACCGCCCGCGCGCGCGCGCGC GTCGGTGCTCCACCTGCATCCTCTAATCCCCGCGTGGGCGGCGCCTTGTCTGATCTGGTT GCCAGCCACAGCTCGCGGGATCTCGCGTGTTTCGGTGGAGGGGATTGCGGCGCCGTGTGA TTCGGCGATTGGGATGAGAGAGGGGAGGCGGCGGCTGCGGCGGTGGCGATGAGTGGCTCG GCGGCGACGCTGGGGATGCGGTGCGGGAGCTACGGCTCCCTCGCGTCGGCCGGCGGCGGG AGGAAGGGCGGGGGCAGGGGGTGGGGGTGGCGAGGCGGCGGGGAGAAGGAGCGGCTGCAG CTGCTCCACCGCGCGCTGCGGCTGGTGGGCCGCCGGAGGGCCGGGGTGCTGCTGCTGCTC GCCGCTGCCTCCGCCGCCGTCTTCTGCTCCATCTTCGCCGTCGTCAAAGATGATAATGCT TCAATGATCATTGCAAATAACTATGAAGTCGCAAATACCATACAGAACTCTGTGTATCCC AGCATGACAAGGCCTCTAATGACGTCCAGCGACCAATTCTCTGCTAGTAGCGTCAACAAA ACTGAACTTCCAAATCGACTTCGTCTTTCATTTGCAAACTTTACACATCATCCTTGTGAA GGTTTCTCAGTTGCCCCTCCCCTGGTTGATCCGAAACGCACTGGACCACGACCATGTGAT GTTTGCTACGTGCCTGTAGACCAGGCGTTCGCTCTTATGCCTCCACAACCTTCACCATCT CCTGTCCTTAAGAACTTAAGTTATGTATTTGAAGACAACATCACTGCAAATTTCTCAAAT CAGGGCTCTGTATTTGGTGGGCATCCATCTCTGGAGCAGAGAAATAAATCTTTTGACATT AGTGAGTCTATGACTGTCCACTGTGGCTTTGTTAGAGGAAAGAAACCTGGCCAAGGTTCT GGATTTGATATCAATGATGATGATCTGTTAGAGATGGAGAAATGCCGTGAGCTGGTTGTA GCTTCTGCTATTTTTGGGAATTATGATATGATTCAACATCCAAGGAATGCCAGCGAATTT TCAAAGGCAAATGCATGTTTTTATATGTTTGTAGATGAAGAAACAGAGGCTTATGTAAAA AATTCTAGCTCATTGTACAGAAACAACAAAGTTGGCTTATGGAGGCTAGTGGTCGTTCGA AATCTCCCATACGAAGATCCAAGGCGTACGGGGAAGATTCCTAAGCTTCTGCTCCATAGG CTTTTTCCAAATGTGAGATTTTCAGTTTGGATAGATGCAAAGCCTTAAGCTCGTTGTGGA CCCTTATCTACTGCTTGAGAGGTTTTTGTGGAGGAAGAATGCTACTTTTGCTATCTCTCG GCACTACAAACGCTTTGATGTATTTGAAGAAGCAGAAGCTAATAAAGCTGCTGGCAAGTA TGACAATGCATCAATTGATTACCAAATAGAGTTTTACCGAAATGAGGGCCTAACATATTA TGCACCTGCTAAGCTTCCTATTACAAGTGATGTCCCTGAAGGTTGTGTCATCATCAGAGA GCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCAC CTCCAGGGATCAAATTAGTTTCAGCACCGTCCGGGACAAAATAAGGGCTAGAGTTGGCTG GATGCCTGAAATGTTCCTGGACTGCGAAAGACGCAACTTCGTTATTCAGGGATACCACAG GGAGCTACTAGAGCAAATGATTGCATCCGGTTGGAAGCCCCCTCCAACGGCCAGTGAACC ATCTCGAAAACTCAGATTAGGTAGCAGGAAAGCTCCTCCATCAAAGAAGTCTTCCATGAA GCGGAAAAGAGTGAAGAAATCGAGCTCGCGGAGGCGTCTCCCCAAACCAATCACTAGGAT GACTGATACTACTACCTGGCAAAAGTTGGGCGCATGATGATCCAGGGCTCTTTCCTCTTT GTTGACACAATTCACTTTGCTGGAGGGCGAGCTCATTCTATTAGGACACATACTTGTAGT TTTTTTTCCCTCCGACGAGATTTGTTCATAGTTTATTCTTGATTGTTGGTGTAAATAACA GCGAAAGCAATATAATCAAATATTTTCG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)