These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1303 fasta sequence [TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCATCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTGGGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGTGATGTAGCCTGTATGGCCTTGCCCGTCGCAAG] [+] EMBL AK069025 [TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCATCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTGGGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGTGATGTAGCCTGTATGGCCTTGCCCGTCGCAAG] consensusID : consensus_4093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1283 fasta sequence [TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACG-TGCCAGAGGGACTTGAAGCTATCATCTTT-ACTGCTGATGGTG-ACATGAGGCAAGCTTTGAA-CAACTTGCAAGCT-ACAGTTAGTGGGTTCC-GTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAAAAAAAAAAAAAAAA] [+] EMBL AB066661 [TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCGCCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGTACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGGTCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGAAGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCGTGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGATGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATGAGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATTCTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTCAAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGACTCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACG TGCCAGAGGGACTTGAAGCTATCATCTTT ACTGCTGATGGTG ACATGAGGCAAGCTTTGAA CAACTTGCAAGCT ACAGTTAGTGGGTTCC GTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGGCTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGC ] [-] EMBL CA763155 [ cgCTCATGGTTTGGGTACCACCTACGAAGGTTCCCTTCGTTGCCGGAGGGCCTGGAAGCCATCATCTTTGGCGCCTGATGGTGCCCCTGAGGCAAGCTTTTAAGCAACCTTCCAGCTCACAGTTAGTGGGTTCCGGTTTTGTTAATCAAGAAAATGTGTTCAAGGGGTG GATCAACCACATCCGTTGCATGTCAAGAATATGGTGAAAAATGTGCTTCATGGAAAGTTTGATGAGGCCTGCTCTGCTCTGAAGCAATTATATGATTTGGGCTACTCTCCCCCTGACATAATCACTACTCTCTTCCGGGTTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGATTTGCTCACATGAGAATTTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGGCAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAATAGCTGTACGTGCAACTGTCCTGGCCCGGTAACCTAATGATCTTAGTTAACAATATTCTGGCCTGCTGAGTACAATCATGTCATCTTTTCAATATGTAAGATAGTGTCTCGCTTAAAGTAGAACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATTTATGTCGAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4093#0 -----------------------TTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCG 37 consensus_4093#1 TCCCTCCACCGCGGCGCGGTTTTTTCCCCTCTCCCGCGCATCCGCCCCGCGCCATGGCCG 60 ************************************* consensus_4093#0 CCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGT 97 consensus_4093#1 CCTCCAGCTCCTCCGCCCCCGCCCTCGCCGACGCCTACGACATCCCGTGGGTGGAGAAGT 120 ************************************************************ consensus_4093#0 ACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGG 157 consensus_4093#1 ACCGCCCCACCCGCGTCGCCGACGTCGTCGGCAACTCCGACGCCGTCGCCCGCCTCCAGG 180 ************************************************************ consensus_4093#0 TCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGA 217 consensus_4093#1 TCATCGCCCGCGACGGCAACATGCCAAACCTAATCCTCTCCGGGCCTCCGGGCACCGGGA 240 ************************************************************ consensus_4093#0 AGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCG 277 consensus_4093#1 AGACTACGAGCATCCTGTCGCTGGCACACGAGCTGCTCGGACCTAGCTACCGCGAGGCCG 300 ************************************************************ consensus_4093#0 TGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGA 337 consensus_4093#1 TGCTCGAGCTCAATGCCTCGGACGACAGGGGCCTGGATGTGGTGCGGAACAAGATCAAGA 360 ************************************************************ consensus_4093#0 TGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATG 397 consensus_4093#1 TGTTTGCGCAGAAGAAGGTCACGCTGCAGCCGGGGAGGCACAAGATCGTCATCTTGGATG 420 ************************************************************ consensus_4093#0 AGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATT 457 consensus_4093#1 AGGCTGACAGCATGACATCGGGAGCACAGCAAGCACTGAGACGAACAATGGAGATTTATT 480 ************************************************************ consensus_4093#0 CTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTC 517 consensus_4093#1 CTAACACCACAAGGTTTGCGCTTGCATGCAACACTTCATCTAAGATCATTGAACCCATTC 540 ************************************************************ consensus_4093#0 AAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGAC 577 consensus_4093#1 AAAGCCGTTGTGCTATTGTACGGTTCTCAAGGCTTTCAGATCAGGAGATTCTTGGCCGAC 600 ************************************************************ consensus_4093#0 TCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCA 637 consensus_4093#1 TCATGATTGTGGTAGCAGCTGAGAAGGTTCCTTACGTGCCAGAGGGACTTGAAGCTATCA 660 ************************************************************ consensus_4093#0 TCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTG 697 consensus_4093#1 TCTTTACTGCTGATGGTGACATGAGGCAAGCTTTGAACAACTTGCAAGCTACAGTTAGTG 720 ************************************************************ consensus_4093#0 GGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGC 757 consensus_4093#1 GGTTCCGTTTTGTTAATCAAGAAAATGTGTTCAAGGTGTGTGATCAACCACATCCGTTGC 780 ************************************************************ consensus_4093#0 ATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTC 817 consensus_4093#1 ATGTCAAGAATATGGTGAAAAATGTGCTTGATGGAAAGTTTGATGAGGCTTGCTCTGCTC 840 ************************************************************ consensus_4093#0 TGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGG 877 consensus_4093#1 TGAAGCAATTATATGATTTGGGCTACTCTCCCACTGACATAATCACTACTCTCTTCCGGG 900 ************************************************************ consensus_4093#0 TTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGAT 937 consensus_4093#1 TTATCAAGAACTACGACATGGCTGAATATCTGAAGCTGGAATTGTTGAAGGAAACCGGAT 960 ************************************************************ consensus_4093#0 TTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTCCTGG 997 consensus_4093#1 TTGCTCACATGAGAATCTGCGATGGTGTTGGCTCATTTCTTCAATTATCAGGCCTTCTGG 1020 ******************************************************* **** consensus_4093#0 CAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAAT 1057 consensus_4093#1 CAAAGTTTGCGTTGGTGAGAGAAACAGCAAAAGCATCATGAACTTGTTGCAGATGGTAAT 1080 ************************************************************ consensus_4093#0 AGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGG 1117 consensus_4093#1 AGCTGTACGTGCAACTGTCCTGGCACGGTAACCTAATGATCTTAGTTAACAATATTCTGG 1140 ************************************************************ consensus_4093#0 CTTGCTGAGTACAATCATGTC--------------------------TCGCTTAAAGTAG 1151 consensus_4093#1 CTTGCTGAGTACAATCATGTCATCTTTTCAATGTGTAAGATAGTGTCTCGCTTAAAGTAG 1200 ********************* ************* consensus_4093#0 AACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATT 1211 consensus_4093#1 AACATCTATGTTATGTGCAATGGAAGATAGCGCCTCGCTTGAGTAAAACTTCTATATATT 1260 ************************************************************ consensus_4093#0 TATGTCGAATGAATGATCCAGCATGGCCAAAGGGGGCTAAATTATGCATCCAGTTCAGGT 1271 consensus_4093#1 TATGTCGAAAAAAAAAAAAAAAA------------------------------------- 1283 ********* ** * * * consensus_4093#0 GATGTAGCCTGTATGGCCTTGCCCGTCGCAAG 1303 consensus_4093#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||