cluster # 4096

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Oryza sativa
cluster # 4096 cluster # 4096 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4096#0 length = 1536 sequences # 2

consensus_4096#1 length = 488 sequences # 1

consensusID : consensus_4096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1536
fasta sequence

                              [GTACCCCCGGTTGGAGGACAGGAAATACCATCAGGGGACCACATGGAACCGTTACATGATGAAGCTTTATCAGAGAACTCCAATGAGCTGCAACAGTGCACAACTAGTGAGAGATCAAGTACAATGATTTCTCCTGCTGCCGCTGACAACAGTATGATTACTATGGCTGCAACATCTGTTGAAAGTAGTGTGTCAGCTGATAAAGTCAGCCCAGTTGAAGGTCAGGTGACAGAAGCTGCAGTTGAGCATGCTCCTGTGGAAAAAGATCAGTGTGAAGAACCAAACACTACAATTGTTGATTCGGGGGACTCATCAGTATCCTTGAAGAATGAAGAGCTGCAGGATCATGATCAAGCTCCTTCAGGATCCTCTATTATGTCCAATTCAGCCGAGCAGCCAGAAGAAGCTAGCGATGTGAACATGCAGCAACAAGTTGAAAATGTGGATACCACACAAGATGCAACCGAAGAATCTGATGCTACACCAGAGATTGGTATGGTTGATGTTACCTATGCAGACACAGAAAATTATGTGCAGTCTCCCTTGCTGCAAACAACATCAAAATTGCAATCAACAACAGGACAAAATGTCCTGAAGGAACCAGAAGCAGCAAAGCAATCTGACGTTTCTGGTGAATATGAGTCAGTACTTGTTGGTAAGCAAAATGAATCCGCTAACAATCTGACAGGAGATTCTGCGAAAGAAGAGCCCCCTCTTGTGGGACTGGGAATGGAAGCTGATACTCATGAAAGTGCTCCTAGAGAATTGAAGGATGAACCTATTTTGCCAGAGACGGAGAGAAGTGAATTATCATGTGAACATGGTGACATCACAGGACATGAGGATTCCGAAATGTATGCGCCACCGGAATGCGAAACCGATGTGCAGAAAGAGAGTTGCTGCGTTGATAGGCGTCGTGCGGACATGCAGGTGCCAAAGGAAGTTGAATGCGATGAGCTGGGAGATGATAATCCGAAGGAAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAAGCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGATGAGAACAAGGTTGCTGAAGAAACTACTTCAGATTATGCGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGCTGAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTGCATCTGGCAGCGATCAGATGGGAGTTATCACGGAACTGAGCGAGAAGGTCAAGACGCTTGAGCGTAAGCTGGCGCGCAAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGGCAAGCAACGGCCAAAGTCCACTGAAGATGATCTCTGAAGTTTTGAGTTTGTGTTTATGGATTCCATGTAGCTGTTTGTAACCATGCCTGTATGAATGTACTACTTGTAATGTACACATGAGTGTTGTGGTACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCCTTGTAATGCTCATGTAGCCTAGTTTAACACGGAGTATCAATGTCATAAGGGAGTTGAATATTTTC]

[+] EMBL AK063689             [GTACCCCCGGTTGGAGGACAGGAAATACCATCAGGGGACCACATGGAACCGTTACATGATGAAGCTTTATCAGAGAACTCCAATGAGCTGCAACAGTGCACAACTAGTGAGAGATCAAGTACAATGATTTCTCCTGCTGCCGCTGACAACAGTATGATTACTATGGCTGCAACATCTGTTGAAAGTAGTGTGTCAGCTGATAAAGTCAGCCCAGTTGAAGGTCAGGTGACAGAAGCTGCAGTTGAGCATGCTCCTGTGGAAAAAGATCAGTGTGAAGAACCAAACACTACAATTGTTGATTCGGGGGACTCATCAGTATCCTTGAAGAATGAAGAGCTGCAGGATCATGATCAAGCTCCTTCAGGATCCTCTATTATGTCCAATTCAGCCGAGCAGCCAGAAGAAGCTAGCGATGTGAACATGCAGCAACAAGTTGAAAATGTGGATACCACACAAGATGCAACCGAAGAATCTGATGCTACACCAGAGATTGGTATGGTTGATGTTACCTATGCAGACACAGAAAATTATGTGCAGTCTCCCTTGCTGCAAACAACATCAAAATTGCAATCAACAACAGGACAAAATGTCCTGAAGGAACCAGAAGCAGCAAAGCAATCTGACGTTTCTGGTGAATATGAGTCAGTACTTGTTGGTAAGCAAAATGAATCCGCTAACAATCTGACAGGAGATTCTGCGAAAGAAGAGCCCCCTCTTGTGGGACTGGGAATGGAAGCTGATACTCATGAAAGTGCTCCTAGAGAATTGAAGGATGAACCTATTTTGCCAGAGACGGAGAGAAGTGAATTATCATGTGAACATGGTGACATCACAGGACATGAGGATTCCGAAATGTATGCGCCACCGGAATGCGAAACCGATGTGCAGAAAGAGAGTTGCTGCGTTGATAGGCGTCGTGCGGACATGCAGGTGCCAAAGGAAGTTGAATGCGATGAGCTGGGAGATGATAATCCGAAGGAAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAAGCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGATGAGAACAAGGTTGCTGAAGAAACTACTTCAGATTATGCGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGCTGAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTGCATCTGGCAGCGATCAGATGGGAGTTATCACGGAACTGAGCGAGAAGGTCAAGACGCTTGAGCGTAAGCTGGCGCGCAAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGGCAAGCAACGGCCAAAGTCCACTGAAGATGATCTCTGAAGTTTTGAGTTTGTGTTTATGGATTCCATGTAGCTGTTTGTAACCATGCCTGTATGAATGTACTACTTGTAATGTACACATGAGTGTTGTGGTACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCCTTGTAATGCTCATGTAGCCTAGTTTAACACGGAGTATCAATGTCATAAGGGAGTTGAATATTTTC]
[+] EMBL CA765411             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATGAATCCGCTAACAATCTGACAGGAGATTCTGCGAAAGAAGAGCCCCCTCTTGTGGGACTGGGAATGGAAGCTGATACTCATGAAAGTGCTCCTAGAGAATTGAAGGATGAACCAATTTTGCCAGAGACGGAGAGAAGTGAATTATCATGTGAACATGGTGACATCACAGGACATGAGGATTCCGAAATGTATGCGCCACCGGAATGCAAAACCGATGTGCAGAAAGAGAGTTGCTGCGTTGATAGGCGTCGTGCGGACATGCAGGTGCCAAAGGAAGTTGAATGCGATGAGCTGGGAGATGATAATCCGAAGGAAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAAGCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGATGAGAACAAGGTTGCTGAAGAAACTACTTCAGATTATGTGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGCTGAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTGCATCTGGCAGCGATCAGATGGGAGTTATCACGGAACTGAGCGAGAAGGTCAAGACGCTTGAGCGTAAGCTGGCGCGCAAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGGCAAGCAACGGCCAAAGTCCACTGAAGATGATCTCTGAAGTTTTGAGNTTGNGGTTATGGATTCCATGTAGCTGNTTGTAACCATGCCTGTATGAATGNACTACTTGGAATGNACACATGAGTGGTGGGGGACTATGCATTGGA NATGTAA ATCATGCCTGGGNTGGGNCCTTG NATGCTCATGTAGCCTAGTTT ACACG                                  ]




>consensus_4096#0
GTACCCCCGGTTGGAGGACAGGAAATACCATCAGGGGACCACATGGAACCGTTACATGAT
GAAGCTTTATCAGAGAACTCCAATGAGCTGCAACAGTGCACAACTAGTGAGAGATCAAGT
ACAATGATTTCTCCTGCTGCCGCTGACAACAGTATGATTACTATGGCTGCAACATCTGTT
GAAAGTAGTGTGTCAGCTGATAAAGTCAGCCCAGTTGAAGGTCAGGTGACAGAAGCTGCA
GTTGAGCATGCTCCTGTGGAAAAAGATCAGTGTGAAGAACCAAACACTACAATTGTTGAT
TCGGGGGACTCATCAGTATCCTTGAAGAATGAAGAGCTGCAGGATCATGATCAAGCTCCT
TCAGGATCCTCTATTATGTCCAATTCAGCCGAGCAGCCAGAAGAAGCTAGCGATGTGAAC
ATGCAGCAACAAGTTGAAAATGTGGATACCACACAAGATGCAACCGAAGAATCTGATGCT
ACACCAGAGATTGGTATGGTTGATGTTACCTATGCAGACACAGAAAATTATGTGCAGTCT
CCCTTGCTGCAAACAACATCAAAATTGCAATCAACAACAGGACAAAATGTCCTGAAGGAA
CCAGAAGCAGCAAAGCAATCTGACGTTTCTGGTGAATATGAGTCAGTACTTGTTGGTAAG
CAAAATGAATCCGCTAACAATCTGACAGGAGATTCTGCGAAAGAAGAGCCCCCTCTTGTG
GGACTGGGAATGGAAGCTGATACTCATGAAAGTGCTCCTAGAGAATTGAAGGATGAACCT
ATTTTGCCAGAGACGGAGAGAAGTGAATTATCATGTGAACATGGTGACATCACAGGACAT
GAGGATTCCGAAATGTATGCGCCACCGGAATGCGAAACCGATGTGCAGAAAGAGAGTTGC
TGCGTTGATAGGCGTCGTGCGGACATGCAGGTGCCAAAGGAAGTTGAATGCGATGAGCTG
GGAGATGATAATCCGAAGGAAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAA
GCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGATGAGAACAAGGTTGCTGAAGAA
ACTACTTCAGATTATGCGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGCT
GAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTGCATCTGGCAGCGATCAG
ATGGGAGTTATCACGGAACTGAGCGAGAAGGTCAAGACGCTTGAGCGTAAGCTGGCGCGC
AAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGGCAAGCAACGGCCAAAGTCCAC
TGAAGATGATCTCTGAAGTTTTGAGTTTGTGTTTATGGATTCCATGTAGCTGTTTGTAAC
CATGCCTGTATGAATGTACTACTTGTAATGTACACATGAGTGTTGTGGTACTATGCATTG
GAGAATGTAAGATCATGCCTGTGTTGGGTCCTTGTAATGCTCATGTAGCCTAGTTTAACA
CGGAGTATCAATGTCATAAGGGAGTTGAATATTTTC

consensusID : consensus_4096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [ACAACNNGANAAAGNGAAAACANAAANCANAGNNAAGANNAAGAGGANGACNANNGGACGANANCGANGGGGANCANNNANGAGGGCAAAGGGANCGAANAGAGGAAAGGGGCAGGAGCNAGGGAAGAAAGANAGANCAAAAACCGTTGAGGGNATGGGGNAGGGGAANNAGGGGGAGGGAAGGAANGGAAATGAGCGNGNAAGGTNAAGAANGATAGGNNNGTAAGCTGNNNGNGNCAANNNGGAGCCAAAGGTAAGGNTACACAGACNAANCAAAACAAGCGGCGGCCAAGAGTCCACAGGAGATGATNTNTGGNGTTTANAGNTNGGAGTTTNTGGTTCCAGGTGGNTGNTNGNAACCATGCCTNTANGAATGTACTACTTGTANNGAACACATGAGTGTTGTGGTACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCCCTTGTAATGCTCATGTAGCCTAGTTTAACAAAAAAAA]

[+] EMBL AA753929             [ACAACNNGANAAAGNGAAAACANAAANCANAGNNAAGANNAAGAGGANGACNANNGGACGANANCGANGGGGANCANNNANGAGGGCAAAGGGANCGAANAGAGGAAAGGGGCAGGAGCNAGGGAAGAAAGANAGANCAAAAACCGTTGAGGGNATGGGGNAGGGGAANNAGGGGGAGGGAAGGAANGGAAATGAGCGNGNAAGGTNAAGAANGATAGGNNNGTAAGCTGNNNGNGNCAANNNGGAGCCAAAGGTAAGGNTACACAGACNAANCAAAACAAGCGGCGGCCAAGAGTCCACAGGAGATGATNTNTGGNGTTTANAGNTNGGAGTTTNTGGTTCCAGGTGGNTGNTNGNAACCATGCCTNTANGAATGTACTACTTGTANNGAACACATGAGTGTTGTGGTACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCCCTTGTAATGCTCATGTAGCCTAGTTTAACAAAAAAAA]




>consensus_4096#1
ACAACNNGANAAAGNGAAAACANAAANCANAGNNAAGANNAAGAGGANGACNANNGGACG
ANANCGANGGGGANCANNNANGAGGGCAAAGGGANCGAANAGAGGAAAGGGGCAGGAGCN
AGGGAAGAAAGANAGANCAAAAACCGTTGAGGGNATGGGGNAGGGGAANNAGGGGGAGGG
AAGGAANGGAAATGAGCGNGNAAGGTNAAGAANGATAGGNNNGTAAGCTGNNNGNGNCAA
NNNGGAGCCAAAGGTAAGGNTACACAGACNAANCAAAACAAGCGGCGGCCAAGAGTCCAC
AGGAGATGATNTNTGGNGTTTANAGNTNGGAGTTTNTGGTTCCAGGTGGNTGNTNGNAAC
CATGCCTNTANGAATGTACTACTTGTANNGAACACATGAGTGTTGTGGTACTATGCATTG
GAGAATGTAAGATCATGCCTGTGTTGGGTCCCTTGTAATGCTCATGTAGCCTAGTTTAAC
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4096#0      GTACCCCCGGTTGGAGGACAGGAAATACCATCAGGGGACCACATGGAACCGTTACATGAT 60
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GAAGCTTTATCAGAGAACTCCAATGAGCTGCAACAGTGCACAACTAGTGAGAGATCAAGT 120
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      ACAATGATTTCTCCTGCTGCCGCTGACAACAGTATGATTACTATGGCTGCAACATCTGTT 180
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GAAAGTAGTGTGTCAGCTGATAAAGTCAGCCCAGTTGAAGGTCAGGTGACAGAAGCTGCA 240
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GTTGAGCATGCTCCTGTGGAAAAAGATCAGTGTGAAGAACCAAACACTACAATTGTTGAT 300
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      TCGGGGGACTCATCAGTATCCTTGAAGAATGAAGAGCTGCAGGATCATGATCAAGCTCCT 360
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      TCAGGATCCTCTATTATGTCCAATTCAGCCGAGCAGCCAGAAGAAGCTAGCGATGTGAAC 420
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      ATGCAGCAACAAGTTGAAAATGTGGATACCACACAAGATGCAACCGAAGAATCTGATGCT 480
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      ACACCAGAGATTGGTATGGTTGATGTTACCTATGCAGACACAGAAAATTATGTGCAGTCT 540
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      CCCTTGCTGCAAACAACATCAAAATTGCAATCAACAACAGGACAAAATGTCCTGAAGGAA 600
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      CCAGAAGCAGCAAAGCAATCTGACGTTTCTGGTGAATATGAGTCAGTACTTGTTGGTAAG 660
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      CAAAATGAATCCGCTAACAATCTGACAGGAGATTCTGCGAAAGAAGAGCCCCCTCTTGTG 720
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GGACTGGGAATGGAAGCTGATACTCATGAAAGTGCTCCTAGAGAATTGAAGGATGAACCT 780
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      ATTTTGCCAGAGACGGAGAGAAGTGAATTATCATGTGAACATGGTGACATCACAGGACAT 840
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GAGGATTCCGAAATGTATGCGCCACCGGAATGCGAAACCGATGTGCAGAAAGAGAGTTGC 900
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      TGCGTTGATAGGCGTCGTGCGGACATGCAGGTGCCAAAGGAAGTTGAATGCGATGAGCTG 960
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GGAGATGATAATCCGAAGGAAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAA 1020
consensus_4096#1      ------------------------------------------------------------
                                                                                  

consensus_4096#0      GCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGATGAGAACAAGGTTGCTGAAGAA 1080
consensus_4096#1      ------ACAACNNGANAAAGNGAAAACANAAANCANAGNNAAGANNAAGAGGANGACNAN 54
                                *      **      *    *   *     *  *  * *  *  **  * 

consensus_4096#0      ACTACTTCAGATTATGCGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGCT 1140
consensus_4096#1      NGGACGANANCGANGGGGANCANNNANGAGGGCAAAGGGANCGAANAGAGGAAAGGGGCA 114
                         **   *      * **      *       **  *   * *  ***  ***   ** 

consensus_4096#0      GAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTG-CATCTGGCAGCG--AT 1197
consensus_4096#1      GGAG-----CNAGGGAAGAAAGANAGANCAAAAACCGTTGAGGGNATGGGGNAGGGGAAN 169
                      * **     *    *  ****** *      *** * **   *  **  ** ** *  * 

consensus_4096#0      CAGATGGGAGTTATCA-CGGAACTGAGCGAGAA-GGTCAAGACGCTT--GAGCGTAAGCT 1253
consensus_4096#1      NAGGGGGAGGGAAGGAANGGAAATGAGCGNGNAAGGTNAAGAANGATAGGNNNGTAAGCT 229
                       **  **  *  *  *  **** ****** * * *** ****    *  *   *******

consensus_4096#0      GGCGCG--CAAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGG-CAAGCAACGGC 1310
consensus_4096#1      GNNNGNGNCAANNNGGAGCCAAAGGTAAGGNTACACAGACNAANCAAAACAAGCGGCGGC 289
                      *       ***   *  ************* ********* ** **   *****  ****

consensus_4096#0      CAA-AGTCCACTGAAGATGATCTCTGAAGTTTTGAGTTTGTGTTTATGGATTCCATGTAG 1369
consensus_4096#1      CAAGAGTCCACAGGAGATGATNTNTGGNGTTTANAGNTNGGAGTTTNTGGTTCCAGGTGG 349
                      *** ******* * ******* * **  ****  ** * *   **   * ***** ** *

consensus_4096#0      CTGTTTGTAACCATGCCTGTATGAATGTACTACTTGTAATGTACACATGAGTGTTGTGGT 1429
consensus_4096#1      NTGNTNGNAACCATGCCTNTANGAATGTACTACTTGTANNGAACACATGAGTGTTGTGGT 409
                       ** * * ********** ** ****************  * ******************

consensus_4096#0      ACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCC-TTGTAATGCTCATGTAG 1488
consensus_4096#1      ACTATGCATTGGAGAATGTAAGATCATGCCTGTGTTGGGTCCCTTGTAATGCTCATGTAG 469
                      ****************************************** *****************

consensus_4096#0      CCTAGTTTAACACGGAGTATCAATGTCATAAGGGAGTTGAATATTTTC 1536
consensus_4096#1      CCTAGTTTAACAAAAAAAA----------------------------- 488
                      ************   *  *