These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1377 fasta sequence [AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGTGTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGTATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACCTAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCAGCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCACTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAACAAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAGAATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATGGACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGCGAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTAGTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGTTTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGAATTAG] [+] EMBL AK061549 [AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGTGTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGTATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACCTAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCAGCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCACTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAACAAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAGAATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATGGACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGCGAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTAGTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGTTTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGAATTAG] consensusID : consensus_4106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA] [+] EMBL AK120937 [TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCACGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA] [+] EMBL AK067747 [ CGCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTCCTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTAGGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAAGTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCGTGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGGACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGATTCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACGACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCAGCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCGTGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCATCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGTAACTAACTGGCCTTTAATTTTGTATGGTAACTAGTATTTATTTTCTCGTTATGTGCACTGTACTTTAGCTTATAAAAGAAATTGAAAGATTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4106#0 --------AAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCAC 52 consensus_4106#1 TCGAATACAAGCTAGGCCAGCACGCGTACACGCGCGCCGCCGACCGCGGACGATGGCCAC 60 **************************************************** consensus_4106#0 GCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGCTCCTCCTC 112 consensus_4106#1 GCATCACCATGGCGCTAATCCACCACCACCTCGCCGTTCCAGTGGCTCCCGATCCTCCTC 120 *************************************************** ******** consensus_4106#0 CTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTA 172 consensus_4106#1 CTCGGGGTCTCGGTCCGGCCACCGCCGCCCGGCGGCTGACCCTTCACCGCCGCCGCCGTA 180 ************************************************************ consensus_4106#0 GGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAA 232 consensus_4106#1 GGAGTGGCGCCGCCGCCGGCAGGATGACAGTCACAGCTTCGTCGATGGTGGAGCCGGCAA 240 ************************************************************ consensus_4106#0 GTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCG 292 consensus_4106#1 GTGGGGAGGAGACGGCGGCGCGTTCGGCGGCGGACGTGGTGAGGGCGTTCTACGACGGCG 300 ************************************************************ consensus_4106#0 TGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGG 352 consensus_4106#1 TGAACCGGCGGGACCTGGCGGCGGTGGAGCCGCTCATCGCGGAGGGGTGCGTCTACGAGG 360 ************************************************************ consensus_4106#0 ACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGAT 412 consensus_4106#1 ACCTCGTCTTCCCCAACCCCTTCGTCGGCCGCGCCGAGATACTCGGCTTCTTCGCCGGAT 420 ************************************************************ consensus_4106#0 TCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACG 472 consensus_4106#1 TCATGGGCTCCGTCAGCTCCGACCTCCGCTTCGTCATCGACGACATCTCCGCCGGCGACG 480 ************************************************************ consensus_4106#0 ACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCA 532 consensus_4106#1 ACTCCCGCGCCGTCGGCGTCACCTGGCACCTCGATTGGAAGGGGCGGCCATTCCCATTCA 540 ************************************************************ consensus_4106#0 GCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCG 592 consensus_4106#1 GCAGGGGATGCAGCTTCTACCGCCTCCAGCTGGACGAGAAGCAGCAGCAGCTGCAGATCG 600 ************************************************************ consensus_4106#0 TGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCA 652 consensus_4106#1 TGTATGGGCGAGACTGCGTGGAGCCAGCAGTGAAGCCAGGGGAATCCGCGCTGCTCATCA 660 ************************************************************ consensus_4106#0 TCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGACGAAGT 712 consensus_4106#1 TCAGGGCCGTCACTTGGATCTTCGAACGCTTTCCACGCCTTGCAAACATGCTGT--AACT 718 ***************************************************** ** * consensus_4106#0 GTGTGATTGGAAAGATCATCTGGAAGTCCCGGGCCCCTGCGAGATGTAAATTCTTCATGT 772 consensus_4106#1 AACTGGCCTTTAATTTTGTATGGTAA----------CTAGTATTTATTTTCTCGTTATGT 768 ** ** * * *** * ** * * * ** * **** consensus_4106#0 ATACCGCGATGCGGGGCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACC 832 consensus_4106#1 GCACTGTACTTTAG--CTTATAAAAGA-AATTGAAAGATTGAA----------------- 808 ** * * * * * ** *** * *** * consensus_4106#0 TAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGAGAGACATGCGCACACATCTTCCTCA 892 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 GCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTCCTCCA 952 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 CTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAAC 1012 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 AAGACCGTAAGACTTTCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAG 1072 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 AATTTTCGACAACAAGGCCATTCCGGCGGCGCACTTATGTGCAGCAATGGAAGATGAATG 1132 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 GACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTGATGGC 1192 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 GAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTA 1252 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 GTGTCTGGCAGGCAGCATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGT 1312 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 TTCTTGTGACTTTTTTCCCCTATCTTAATAAACTTCGACTGGCTTCCGCCAGCCCGGCGA 1372 consensus_4106#1 ------------------------------------------------------------ consensus_4106#0 ATTAG 1377 consensus_4106#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||