cluster # 4118

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Oryza sativa
cluster # 4118 cluster # 4118 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4118#0 length = 777 sequences # 1

consensus_4118#1 length = 370 sequences # 1
consensus_4118#2 length = 265 sequences # 1

consensusID : consensus_4118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence

                              [TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACTTATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTTATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCTCGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTACATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTCTCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTTCTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCAAGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATCTGAGCCCAATTAGGCCTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAAAATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC]

[+] EMBL CB631471             [TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACTTATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTTATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCTCGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTACATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTCTCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTTCTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCAAGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATCTGAGCCCAATTAGGCCTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAAAATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC]




>consensus_4118#0
TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCA
TTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACT
TATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTT
ATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCT
CGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTAC
ATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTC
TCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTT
CTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTA
TCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCA
TTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCAA
GATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATCTGAGCCCAATTAGGCCT
CCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAAAA
TCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC

consensusID : consensus_4118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CCGCTGTTTTTATTCATTTTGTGTTTTAGAATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTTTTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTCATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTGGGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC]

[-] EMBL AU225796             [CCGCTGTTTTTATTCATTTTGTGTTTTAGAATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTTTTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTCATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTGGGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC]




>consensus_4118#1
CCGCTGTTTTTATTCATTTTGTGTTTTAGAATTTTTGGAAGACAGTGGAAAATGGTTAGT
GGAAGAAGGGCAATGATGATCAACCTTTTTTGACAATCCTGCCATTGAACAATCAAGGCA
GCTGTGGGTGTCAATTGGACCTGGTCCTATCATCTCTGGCAACCTATCCACTCACTAATG
TTAGGTGGTTTCTTGCAACTAGGATGGTCATTCTGTTAATGATAGCCAGGGCAAATCCAC
TTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTCTGTATGACTGA
GTAAAGGCGAATTCTGAGCCTACTTGGGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAA
AAAAAGCGGC

consensusID : consensus_4118#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [TCAATTGGACCTGGTCCTATCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTNTTGCAANTAGGATGGTCATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATTTGANCCTACTTGTAAAGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA]

[+] EMBL AA754020             [TCAATTGGACCTGGTCCTATCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTNTTGCAANTAGGATGGTCATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATTTGANCCTACTTGTAAAGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA]




>consensus_4118#2
TCAATTGGACCTGGTCCTATCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTT
NTTGCAANTAGGATGGTCATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGA
TGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAA
TTTGANCCTACTTGTAAAGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4118#1      ------------------------------------------------------------
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCA 60
                                                                                  

consensus_4118#1      ------------------------------------------------------------
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      TTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACT 120
                                                                                  

consensus_4118#1      ------------------------------------------------------------
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      TATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTT 180
                                                                                  

consensus_4118#1      ------------------------------------------------------------
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      ATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCT 240
                                                                                  

consensus_4118#1      ------------------------------------------------------------
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      CGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTAC 300
                                                                                  

consensus_4118#1      -------------------------------CCGCTGTTTTTATTCATTTTGTGTTTTAG 29
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      ATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTC 360
                                                                                  

consensus_4118#1      AATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTT 89
consensus_4118#2      ------------------------------------------------------------
consensus_4118#0      TCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTT 420
                                                                                  

consensus_4118#1      TTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTA 149
consensus_4118#2      -----------------------------------------TCAATTGGACCTGGTCCTA 19
consensus_4118#0      CTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTA 480
                                                               ************* *****

consensus_4118#1      TCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTC 209
consensus_4118#2      TCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTN-TTGCAANTAGGATGGTC 78
consensus_4118#0      TCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTC-TTGCACCTAGGATGGTC 539
                      **** * **********************************  *****  **********

consensus_4118#1      ATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCA 269
consensus_4118#2      ATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCA 138
consensus_4118#0      ATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCA 599
                      *** *********** ***************** ***** ****  ***** **** ***

consensus_4118#1      AGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTG--- 326
consensus_4118#2      AGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATT-TGANCCTACTTGTAA 197
consensus_4118#0      AGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATC-TGAGCCCAATTAGGC 658
                      *********** ***** * * ** *  ***************  *** ** * **    

consensus_4118#1      -GGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC--------------- 370
consensus_4118#2      AGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA 257
consensus_4118#0      CTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAA 718
                         *   * **   *          *  *     *                         

consensus_4118#1      -----------------------------------------------------------
consensus_4118#2      AAAAAAAA--------------------------------------------------- 265
consensus_4118#0      AATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC 777