cluster # 4123

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Oryza sativa
cluster # 4123 cluster # 4123 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4123#0 length = 1135 sequences # 2

consensus_4123#1 length = 835 sequences # 1

consensusID : consensus_4123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1135
fasta sequence

                              [ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGCGCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCTCCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCCGGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGCAGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCGTGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCTCCATCGTCGTGCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCCAGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCGTCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCGTTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCCTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATGAGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA]

[+] EMBL AK121039             [ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGCGCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCTCCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCCGGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGCAGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCGTGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCTCCATCGTCGTGCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCCAGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCGTCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCGTTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCCTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATGAGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAA                                                                        ]
[+] EMBL AU173878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTTGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA]




>consensus_4123#0
ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGC
GCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCT
CCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCC
GGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGC
AGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCG
TGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCT
CCATCGTCGTGCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCCA
GCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCGT
CTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCGT
TCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCC
TGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATGA
GCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGT
TCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGG
AGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATCCT
CGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTC
GTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTA
AAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGG
GTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCA
TCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA

consensusID : consensus_4123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 835
fasta sequence

                              [AATCTTTTCCACATCTATGTCCTTATTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACATGAGGCCGCTCGTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTTCGAGGGTGACAGCCGTTCCTCTTCCGGTTCTCCGGGGGTTTTTTCTCGGTCGTCCATAGTGTATGCGCGAAAATGTGTCGCGCGGGGTTTAAAGCAAAGTTCGGTGGGTTCGGCCGGTATAGGATGTCGGTTCGAGATCTCCCTTCGGGTTGCGGGCCAGGGCACGGAATCGGGACGCGGCNAACCCGGTTAATGAGCNCGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACGTTTACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCACCCATCTTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC]

[-] EMBL AW155119             [AATCTTTTCCACATCTATGTCCTTATTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACATGAGGCCGCTCGTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTTCGAGGGTGACAGCCGTTCCTCTTCCGGTTCTCCGGGGGTTTTTTCTCGGTCGTCCATAGTGTATGCGCGAAAATGTGTCGCGCGGGGTTTAAAGCAAAGTTCGGTGGGTTCGGCCGGTATAGGATGTCGGTTCGAGATCTCCCTTCGGGTTGCGGGCCAGGGCACGGAATCGGGACGCGGCNAACCCGGTTAATGAGCNCGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACGTTTACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCACCCATCTTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC]




>consensus_4123#1
AATCTTTTCCACATCTATGTCCTTATTCTATCCTTATATGAGCTTATACTCGTTCCTGAT
ACAATCGGGACATGAGGCCGCTCGTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCG
TACTTGGCCCGTTATTGTTTCGAGGGTGACAGCCGTTCCTCTTCCGGTTCTCCGGGGGTT
TTTTCTCGGTCGTCCATAGTGTATGCGCGAAAATGTGTCGCGCGGGGTTTAAAGCAAAGT
TCGGTGGGTTCGGCCGGTATAGGATGTCGGTTCGAGATCTCCCTTCGGGTTGCGGGCCAG
GGCACGGAATCGGGACGCGGCNAACCCGGTTAATGAGCNCGCGGTGGGGATGAGCTTCAT
CTCGCTGTACGAGCCGNCGGGCATGGCCGGCACGTTTACCTCTTCGCGGCCGTGCTCCGC
GGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGA
GATGGAGGCGCTCTTCGACGCCGCCACCCATCTTCGCCGCCGCCGGCGTCGTGATCGATC
ACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGC
CGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATT
GGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAA
TATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCA
TGAAACGATAGGGATTACAGTCCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4123#0      ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGC 60
consensus_4123#1      ------------------------------------------------------------
                                                                                  

consensus_4123#0      GCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCT 120
consensus_4123#1      ------------------------------------------------------------
                                                                                  

consensus_4123#0      CCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCC 180
consensus_4123#1      ------------------------------------------------------------
                                                                                  

consensus_4123#0      GGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGC 240
consensus_4123#1      ------------------------------------------------------------
                                                                                  

consensus_4123#0      AGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCG 300
consensus_4123#1      -----------------------------------AATCTTTTCCACATCTATGTCCTTA 25
                                                            *   *   ** * * ***    

consensus_4123#0      TGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCT 360
consensus_4123#1      TTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACA--TGAGGCCGCTC 83
                      *    **       * * *  *   **   * *      ****  *     ** ****  

consensus_4123#0      CCATCGTCGT-GCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCC 419
consensus_4123#1      GTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTT--- 140
                          * *    ***    ***      *     ****  *   ***** *  ** *    

consensus_4123#0      AGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCG 479
consensus_4123#1      --CGAGGGTGACA-------GCCGTTCCTCTTCC---GGTTCTCCGGGGG-------TTT 181
                        ** *** * **       * ** ***** ***   * ******  * *       *  

consensus_4123#0      TCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCG 539
consensus_4123#1      TTTCTCGGTC---GTCCATAGTG-TATGCG----CGA-AAATGTGTCGC-----GCGGGG 227
                      * *  ***     *  *  **** *  ***    ***  *  *** **      **** *

consensus_4123#0      TTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATC 599
consensus_4123#1      TTTAAAGCAAAGTT--CGGTGGG--TTCGGCCGGT-ATA-GGATGTC--GGTTCGAGATC 279
                      ** *  ** * ***  ** ****  *  ******* *** ******   ***  ******

consensus_4123#0      CTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATG 659
consensus_4123#1      T--CCCTTCGGGTTGCGGGC-CAGGGCACGG-AATCGGGACGCGGCNAACCCGGTTAATG 335
                         **  *  ** ******* ********** **********  *   * **** * ***

consensus_4123#0      AGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACG 719
consensus_4123#1      AGCNCG-CGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACG 394
                      *** ** ******************************** ** *****************

consensus_4123#0      TTCTACCTCTTCGCGGC-GTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCC 778
consensus_4123#1      TT-TACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCC 453
                      ** ************** ******************************************

consensus_4123#0      GGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATC 838
consensus_4123#1      GGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCC-ACCCATC 512
                      **************************************************** *******

consensus_4123#0      CTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGG 898
consensus_4123#1      TTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGG 572
                       ***********************************************************

consensus_4123#0      TCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTG 958
consensus_4123#1      TCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTG 632
                      ************************************************************

consensus_4123#0      TAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGAT 1018
consensus_4123#1      TAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGAT 692
                      ************************************************************

consensus_4123#0      GGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGAT 1078
consensus_4123#1      GGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGAT 752
                      ************************************************************

consensus_4123#0      CATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA--- 1135
consensus_4123#1      CATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAA 812
                      *********************************************************   

consensus_4123#0      -----------------------
consensus_4123#1      AAAAAAAAACTCGAGACTAGTTC 835