cluster # 4130

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Oryza sativa
cluster # 4130 cluster # 4130 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4130#0 length = 816 sequences # 2

consensus_4130#1 length = 575 sequences # 1

consensusID : consensus_4130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 816
fasta sequence

                              [TCTTTTTTTTGGAATCAACTGGTTAAACATCTCAATTTCCACATGCCTCTAGTTCTTGAGTTGAGTGTTTCCAGTAAGCAAATCTGCTGTCAAAAAGTGACAACGGGTAGTTAGGTCAACACAATTGTACATGCCTGTAGCACCAACACTGCAGCCCTGTTGAAAAGAATATATATCTACAATGCCACCATTTTATCCCCCCAACTAATTTTTGGGCAAAATTCAACAATATACTACTAGCCATATTGTCGCCCATTAAACTCATGAATTTCTTCTGTATATGTATTCTAACCCAAAATGAAGCTCTTCGTCAGAACTTCAACCCGCTACAAACTATAAAACATCAAGGCAATGAAGACAGTAACGGTTAAGGATTCTCTCAACAAGAGAGTTGGGTTCAGGAACCAGCGAAGAAGTATTGCTGTTCCAGAGGTGGAAAGTAGTAGAGTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTAGAGCTTATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAAGAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGTTTTTTTCAAATGCTAATACAGCACCACTAAAACTGGAATTTTCAGAAACTTGTTTGACAACACCAATAGAATTCCGGAGTGCGTTTAAAGGTTTAAG]

[+] EMBL CB621496             [TCTTTTTTTTGGAATCAACTGGTTAAACATCTCAATTTCCACATGCCTCTAGTTCTTGAGTTGAGTGTTTCCAGTAAGCAAATCTGCTGTCAAAAAGTGACAACGGGTAGTTAGGTCAACACAATTGTACATGCCTGTAGCACCAACACTGCAGCCCTGTTGAAAAGAATATATATCTACAATGCCACCATTTTATCCCCCCAACTAATTTTTGGGCAAAATTCAACAATATACTACTAGCCATATTGTCGCCCATTAAACTCATGAATTTCTTCTGTATATGTATTCTAACCCAAAATGAAGCTCTTCGTCAGAACTTCAACCCGCTACAAACTATAAAACATCAAGGCAATGAAGACAGTAACGGTTAAGGATTCTCTCAACAAGAGAGTTGGGTTCAGGAACCAGCGAAGAAGTATTGCTGTTCCAGAGGTGGAAAGTAGTAGAGTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTAGAGCTTATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAAGAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGTTTTTTTCAAATGCTAATACAGCACCACTAAAACTGGAATTTTCAGAAACTTGTTTGACAACACCAATAGAATTCCGGAGTGCGTTTAAAGGTTTAAG]
[-] EMBL AU068638             [    TTTTTT    TTAACTGGTTAAACATCTCAATTTCCAAATGCCTCTAGTTCTTGAGTTGAGTGTTTCCAGTAAGCAAATCTGCTGTCAAAAAGTGACAATGGGTAGTCAGGTCAACACAATTGTACATGCCTGTAGCACCAACACTGCAGCCCTGTTGAAAAGAATATATATCTACAATGCCACCATTTTATCCCCCCAACTAATTTTTGGGCAAAATTCAACAATATACTACTAGCCATATTGTCGCCCATTAAACTCATGAATTTCTTCTGTATATGTATTCTAACCCAAAATGAAGCTCTTCGTCAGAACTTCAACCCGCTACAAACTATAAAACATCAAGGCAATGAAGACAGTAACGGNTAAGGNTTCTCTCAACAAGAGAGTTGGGTTCAGGAACCAGCGAAGAAGTAATGCTGTTCCAGAGGTGGAAAGTAGTAGAGTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTTGAGCTTATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTC                                                                                                                                                                              ]




>consensus_4130#0
TCTTTTTTTTGGAATCAACTGGTTAAACATCTCAATTTCCACATGCCTCTAGTTCTTGAG
TTGAGTGTTTCCAGTAAGCAAATCTGCTGTCAAAAAGTGACAACGGGTAGTTAGGTCAAC
ACAATTGTACATGCCTGTAGCACCAACACTGCAGCCCTGTTGAAAAGAATATATATCTAC
AATGCCACCATTTTATCCCCCCAACTAATTTTTGGGCAAAATTCAACAATATACTACTAG
CCATATTGTCGCCCATTAAACTCATGAATTTCTTCTGTATATGTATTCTAACCCAAAATG
AAGCTCTTCGTCAGAACTTCAACCCGCTACAAACTATAAAACATCAAGGCAATGAAGACA
GTAACGGTTAAGGATTCTCTCAACAAGAGAGTTGGGTTCAGGAACCAGCGAAGAAGTATT
GCTGTTCCAGAGGTGGAAAGTAGTAGAGTCATTTACAATCCTAGAAAACAGAGCATCATG
TTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTAGAGCT
TATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATC
TGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAA
GAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGTT
TTTTTCAAATGCTAATACAGCACCACTAAAACTGGAATTTTCAGAAACTTGTTTGACAAC
ACCAATAGAATTCCGGAGTGCGTTTAAAGGTTTAAG

consensusID : consensus_4130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [GTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTTGAGCTTATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAAGAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGCAATTAACATAAGTTAGGTGAAAAATACATGATTGCTATGATTAGTTATGCATAAGCATATATATACGCCTGCAAAGTTATAATCAACAAAAAGAAACCAAGATGAGATATAAACCTTGTGTACTTGAGACCTAGTTATTTATACCCATTATATTTTGTGATACTTCTAGAATACTGTTCATGATCCATATACTAATTCATAGTACAACTGTAACAAAAGAAACAAACCAAAATAATAGCAGCAACATGTTTTTTTCCCTTTTTTTTCCTAAAATTAAATAAAACACTAAAAGATAGTAATGGA]

[-] EMBL CF307184             [GTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTTGAGCTTATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAAGAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGCAATTAACATAAGTTAGGTGAAAAATACATGATTGCTATGATTAGTTATGCATAAGCATATATATACGCCTGCAAAGTTATAATCAACAAAAAGAAACCAAGATGAGATATAAACCTTGTGTACTTGAGACCTAGTTATTTATACCCATTATATTTTGTGATACTTCTAGAATACTGTTCATGATCCATATACTAATTCATAGTACAACTGTAACAAAAGAAACAAACCAAAATAATAGCAGCAACATGTTTTTTTCCCTTTTTTTTCCTAAAATTAAATAAAACACTAAAAGATAGTAATGGA]




>consensus_4130#1
GTCATTTACAATCCTAGAAAACAGAGCATCATGTTGGGCTCTTTCATCCGTGCTATCTGC
TTCTGAGAAGTACCTTGTAATATCTGTTGAGCTTATGGGATAAAATGCAACAGAAGGTTC
AAACTTTATGTCAAGATGCCCACTGTTGTCATCTGCTTTGTCGGACATATTTCTGATTAC
TCTTGTCATAAGTTCAGCACCATTCCACTGCAAGAGTTCATCATCATATGTTGAATGAAA
TTCCTTCAGGCACTCCGCTAAGAAAGGGCTGCAATTAACATAAGTTAGGTGAAAAATACA
TGATTGCTATGATTAGTTATGCATAAGCATATATATACGCCTGCAAAGTTATAATCAACA
AAAAGAAACCAAGATGAGATATAAACCTTGTGTACTTGAGACCTAGTTATTTATACCCAT
TATATTTTGTGATACTTCTAGAATACTGTTCATGATCCATATACTAATTCATAGTACAAC
TGTAACAAAAGAAACAAACCAAAATAATAGCAGCAACATGTTTTTTTCCCTTTTTTTTCC
TAAAATTAAATAAAACACTAAAAGATAGTAATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4130#0      TCTTTTTTTTGGAATCAACTGGTTAAACATCTCAATTTCCACATGCCTCTAGTTCTTGAG 60
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      TTGAGTGTTTCCAGTAAGCAAATCTGCTGTCAAAAAGTGACAACGGGTAGTTAGGTCAAC 120
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      ACAATTGTACATGCCTGTAGCACCAACACTGCAGCCCTGTTGAAAAGAATATATATCTAC 180
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      AATGCCACCATTTTATCCCCCCAACTAATTTTTGGGCAAAATTCAACAATATACTACTAG 240
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      CCATATTGTCGCCCATTAAACTCATGAATTTCTTCTGTATATGTATTCTAACCCAAAATG 300
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      AAGCTCTTCGTCAGAACTTCAACCCGCTACAAACTATAAAACATCAAGGCAATGAAGACA 360
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      GTAACGGTTAAGGATTCTCTCAACAAGAGAGTTGGGTTCAGGAACCAGCGAAGAAGTATT 420
consensus_4130#1      ------------------------------------------------------------
                                                                                  

consensus_4130#0      GCTGTTCCAGAGGTGGAAAGTAGTAGAGTCATTTACAATCCTAGAAAACAGAGCATCATG 480
consensus_4130#1      ---------------------------GTCATTTACAATCCTAGAAAACAGAGCATCATG 33
                                                 *********************************

consensus_4130#0      TTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTAGAGCT 540
consensus_4130#1      TTGGGCTCTTTCATCCGTGCTATCTGCTTCTGAGAAGTACCTTGTAATATCTGTTGAGCT 93
                      ****************************************************** *****

consensus_4130#0      TATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATC 600
consensus_4130#1      TATGGGATAAAATGCAACAGAAGGTTCAAACTTTATGTCAAGATGCCCACTGTTGTCATC 153
                      ************************************************************

consensus_4130#0      TGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAA 660
consensus_4130#1      TGCTTTGTCGGACATATTTCTGATTACTCTTGTCATAAGTTCAGCACCATTCCACTGCAA 213
                      ************************************************************

consensus_4130#0      GAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGTT 720
consensus_4130#1      GAGTTCATCATCATATGTTGAATGAAATTCCTTCAGGCACTCCGCTAAGAAAGGGCTGCA 273
                      **********************************************************  

consensus_4130#0      TTTTTCAAATGCTA--------ATACAGCACCACTAAAACTGGAATTTTCAGAAACTTGT 772
consensus_4130#1      ATTAACATAAGTTAGGTGAAAAATACATGATTGCTATGATTAGT-TATGCATAAGCATAT 332
                       **  ** * * **        *****  *   ***  * * *  * * ** ** * * *

consensus_4130#0      TTGACAACACCAATAGAATTCCGGAGTGCGTTTAAAGGTTTAAG---------------- 816
consensus_4130#1      ATA--TACGCCTGCAAAGTTATAATCAACAAAAAGAAACCAAGATGAGATATAAACCTTG 390
                       *    ** **   * * **        *    * *     *                  

consensus_4130#0      ------------------------------------------------------------
consensus_4130#1      TGTACTTGAGACCTAGTTATTTATACCCATTATATTTTGTGATACTTCTAGAATACTGTT 450
                                                                                  

consensus_4130#0      ------------------------------------------------------------
consensus_4130#1      CATGATCCATATACTAATTCATAGTACAACTGTAACAAAAGAAACAAACCAAAATAATAG 510
                                                                                  

consensus_4130#0      ------------------------------------------------------------
consensus_4130#1      CAGCAACATGTTTTTTTCCCTTTTTTTTCCTAAAATTAAATAAAACACTAAAAGATAGTA 570
                                                                                  

consensus_4130#0      -----
consensus_4130#1      ATGGA 575