cluster # 4138

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Oryza sativa
cluster # 4138 cluster # 4138 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4138#0 length = 438 sequences # 2

consensus_4138#1 length = 401 sequences # 1

consensusID : consensus_4138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 438
fasta sequence

                              [GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGACGGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCTGATTCTGTCATGCAAAAA]

[+] EMBL AU166785             [GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGACGGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCTGATTCTGTCATGCAAAAA]
[+] EMBL AK105452             [                                                                                                                    GGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATC                   ]




>consensus_4138#0
GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGAC
GGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGAT
GATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCC
AAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGT
CTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGT
TGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTT
GTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCT
GATTCTGTCATGCAAAAA

consensusID : consensus_4138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [ACGAGATTTTACGTCTACATGCACAAAGGCAAAACACAAAAAAACGGCTTAACATCAGAATGTTCAAATGTTGCGGTGTGTATTTTATTGGAAAATCTGAATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCCCCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCACTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTACTATATCGCTCTCCCTCCAATCTCTTATTTCTCTCCCCCGGGGGGGGGGGGGGCCTCTGGGTACCCCCTCTTCTTCCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGTCCCCCCTTTTTTTAT]

[+] EMBL AA754151             [ACGAGATTTTACGTCTACATGCACAAAGGCAAAACACAAAAAAACGGCTTAACATCAGAATGTTCAAATGTTGCGGTGTGTATTTTATTGGAAAATCTGAATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCCCCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCACTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTACTATATCGCTCTCCCTCCAATCTCTTATTTCTCTCCCCCGGGGGGGGGGGGGGCCTCTGGGTACCCCCTCTTCTTCCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGTCCCCCCTTTTTTTAT]




>consensus_4138#1
ACGAGATTTTACGTCTACATGCACAAAGGCAAAACACAAAAAAACGGCTTAACATCAGAA
TGTTCAAATGTTGCGGTGTGTATTTTATTGGAAAATCTGAATTCTGTCATGCATTCAAGT
CTGAATCCTTGTTAAAAAAAATGCATATTACCTTCCCCCTTCTCTCCCCCCCCTATCCCC
TTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCACTCCCCTCCTCTTTACCTCTTATTG
CTTCCTCTTTACTATATCGCTCTCCCTCCAATCTCTTATTTCTCTCCCCCGGGGGGGGGG
GGGGCCTCTGGGTACCCCCTCTTCTTCCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTT
TTCGCTAACTCCCTCCCCGGGGGGGTCCCCCCTTTTTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4138#0      GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGAC 60
consensus_4138#1      -------------------ACGA-GATTTTACGTCTACATGCACAAAGGCAAAACACAAA 40
                                         * ** ***  *     *     * *  *******     * 

consensus_4138#0      GGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGAT 120
consensus_4138#1      AAAACGGCTTAACATCAGAATGTTCA-AATGTTG-CGGTGTGTATTTTATTGGAAAATCT 98
                        *       *  ** *  *** * *  * *  *  ****   *      ***  *   *

consensus_4138#0      GATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCC 180
consensus_4138#1      GA--ATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCC 156
                      **  **  **      **     *  * *   *  * *  *  *   *      ******

consensus_4138#0      AAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGT 240
consensus_4138#1      CCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCA- 215
                                      *** ** * *    *** * *     *  **  *** * *    

consensus_4138#0      CTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGT 300
consensus_4138#1      CTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTA--CTATATCGCTC-TCCCTCCAAT 272
                      **    * ** ****  *  *    *    * *     **** * ***  *   *    *

consensus_4138#0      TGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTT 360
consensus_4138#1      CTCTTATTTCTCTCCCCCGGGGGGGGGGGG----GGCCTCTG--GGTACCCCCTCTTCTT 326
                         **   ******    * *  **         * * ****  * **  ** *  ****

consensus_4138#0      GTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCT 420
consensus_4138#1      CCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGT 386
                              * *    * **     * *    *  * ** *   *   *    ** *   *

consensus_4138#0      GATTCTGTCATGCAAAAA 438
consensus_4138#1      CCCCCCTTTTTTTAT--- 401
                          *  *  *  *