cluster # 4146

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Oryza sativa
cluster # 4146 cluster # 4146 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4146#0 length = 1032 sequences # 2

consensus_4146#1 length = 282 sequences # 1

consensusID : consensus_4146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1032
fasta sequence

                              [AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGGAGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTCTGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGG-GCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCAGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGCACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCATTTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAAATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAAATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGGAATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTCTTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAACAACTTCATCACA]

[+] EMBL AK061252             [AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGGAGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTCTGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGG GCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCAGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGCACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCATTTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAAATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAAATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGGAATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTCTTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAACAACTTCATCACA]
[+] EMBL AU077531             [                                                                                                                                                      GGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGANGAGCGCACGGCGCGGNGCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCA CTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAAGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_4146#0
AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGG
AGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTC
TGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGG
TGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGGGCGCTCG
CCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCT
GCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGC
AGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACT
ACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCG
ACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCG
CACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCAT
TTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAA
ATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAA
ATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATT
CATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGG
AATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATT
AAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTC
TTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAAC
AACTTCATCACA

consensusID : consensus_4146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [ATCCCGANGATAGACTTGGCGGTTGGGAGCNAAATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGGAATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU077532             [ATCCCGANGATAGACTTGGCGGTTGGGAGCNAAATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGGAATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4146#1
ATCCCGANGATAGACTTGGCGGTTGGGAGCNAAATGATGGCGCTACCGTTTAGCTGTTTT
AAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGNTTTCACAGTTCCTGCATTTTTG
TTTGTAGGNCACTGAAGCAATAGCNTCAGTAGGAATCTCGGCAATGTTTTANTGAACCCC
TGAATNTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACNCAATGTACCCCTTTTAG
TTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4146#0      AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGG 60
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      AGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTC 120
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGG 180
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGGGCGCTCG 240
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      CCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCT 300
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      GCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGC 360
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      AGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACT 420
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      ACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCG 480
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      ACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCG 540
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      CACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCAT 600
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      TTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAA 660
consensus_4146#1      ------------------------------------------------------------
                                                                                  

consensus_4146#0      ATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAA 720
consensus_4146#1      ---------------------------ATCCCGANGATAGACTTGGCGGTTGGGAGCNAA 33
                                                 ******* ********************** **

consensus_4146#0      ATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATT 780
consensus_4146#1      ATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATT 93
                      ************************** *********************************

consensus_4146#0      CATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGG 840
consensus_4146#1      CATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGG 153
                      **** ****************************** *************** ********

consensus_4146#0      AATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATT 900
consensus_4146#1      AATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATT 213
                      ****************** **** ******** ***************************

consensus_4146#0      AAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTC 960
consensus_4146#1      AAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 273
                      ********* **********************  *        ***  *           

consensus_4146#0      TTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAAC 1020
consensus_4146#1      AAAAAAAAA--------------------------------------------------- 282
                          **                                                      

consensus_4146#0      AACTTCATCACA 1032
consensus_4146#1      ------------