cluster # 4149

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Oryza sativa
cluster # 4149 cluster # 4149 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4149#0 length = 813 sequences # 2

consensus_4149#1 length = 234 sequences # 1

consensusID : consensus_4149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 813
fasta sequence

                              [TTCCAAGAATCGAACGGAGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGACGAG-GAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGCGGCGCCGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGAACAAGAGGCGGGTCGCCGCCGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGA]

[+] EMBL AK121255             [TTCCAAGAATCGAACGGAGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGACGAG GAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGCGGCGCCGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGAACAAGAGGCGGGTCGCCGCCGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGA]
[+] EMBL OSS15661A            [                   GCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGGAATNGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGACGAGNGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTNATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTTCCTTCCACCGACCTTGTNCCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_4149#0
TTCCAAGAATCGAACGGAGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGG
AATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGACGAGGAGCATGA
GGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCA
TCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCG
CCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCC
TCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCT
CCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCC
GCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACC
TCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGCGGCGCCG
CCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGT
GCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGA
ACAAGAGGCGGGTCGCCGCCGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGG
CGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGG
AGTTCCTGCTCGCCAATGCCGCCGACGAGGCGA

consensusID : consensus_4149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [CCACCCACGAGTACCGAGAACGGTGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGNCGACGAGGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATNTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCA]

[+] EMBL AU089778             [CCACCCACGAGTACCGAGAACGGTGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGNCGACGAGGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATNTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCA]




>consensus_4149#1
CCACCCACGAGTACCGAGAACGGTGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCA
GGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGNCGACGAGGA
GCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGT
GCCCCATNTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4149#0      ----TTCCAAGAATCGA--ACGGAGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCA 54
consensus_4149#1      CCACCCACGAGTACCGAGAACGGTGGCGTCTCGCTATCGCCATCGCCATCGCCATGGGCA 60
                             * ** * ***  **** ************************************

consensus_4149#0      GGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGACGAGGA 114
consensus_4149#1      GGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGNCGACGAGGA 120
                      ************************************************** *********

consensus_4149#0      GCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGT 174
consensus_4149#1      GCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGT 180
                      ************************************************************

consensus_4149#0      GCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACG 234
consensus_4149#1      GCCCCATNTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCA------ 234
                      ******* **********************************************      

consensus_4149#0      ACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGC 294
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      TCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACT 354
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      GGTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCC 414
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      TTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGG 474
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      CGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGCG 534
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      GCGCCGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGG 594
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      AAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGG 654
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      ACGCGAACAAGAGGCGGGTCGCCGCCGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGT 714
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      CCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGC 774
consensus_4149#1      ------------------------------------------------------------
                                                                                  

consensus_4149#0      TGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGA 813
consensus_4149#1      ---------------------------------------