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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2377 fasta sequence
[GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTTACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCAACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCAACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGGCCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACAAGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCATCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTG-AGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGTCGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCAAGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACGAGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGTTCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCGTCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCGCCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGGCGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGGAGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCTGCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGCAGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGGAGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGGTGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGATCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGCTCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCTCGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGGCGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAGAGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCGGCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCATGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGGAGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCGTGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAG]
[+] EMBL AK109764 [GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTTACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCAACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCAACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGGCCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACAAGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCATCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTG AGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGTCGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCAAGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACGAGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGTTCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCGTCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCGCCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGGCGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGGAGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCTGCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGCAGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGGAGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGGTGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGATCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGCTCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCTCGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGGCGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAGAGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCGGCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCATGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGGAGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCGTGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAG]
[+] EMBL C73025 [ CAACCAGTGCGTCGAGGGCCTCATCTCCGTCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCTGCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCAGCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCGGCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCCTCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCGTTGAAGCACGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACCGTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTT ]
consensusID : consensus_4154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[TTCTGGCTGGGGNTGCTCCGGCGGCTGGACACGTGCATCAAGTCGGACCTGGCGGCGGNCGGCGGCGCCGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAAAATTAGGAATCAAAGACTAATGAGACTTTTAAAAA]
[+] EMBL AU101223 [TTCTGGCTGGGGNTGCTCCGGCGGCTGGACACGTGCATCAAGTCGGACCTGGCGGCGGNCGGCGGCGCCGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGAGATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCACATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACTCACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAATGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTAGGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAAAATTAGGAATCAAAGACTAATGAGACTTTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4154#0 GTTTATCATTTATTTGACTTACTTACAAGTGAACTCACGGGTTGGCCGGCTTGCATCCTT 60
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 ACCCACAGGTGAAGAAAAAGATGTCGGAGGACGACTTCATCCGCAACAACCGTGCCATCA 120
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 ACGCCGGCAAGGACCTCCCCAGGGAGTACCTCTCCGAGCTCTTCCACTCCATCTCCGGCA 180
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 ACGCCATCACCGTCTTCAGCCAGGCCTCCGCCGCCGCCGAGATGACGCCCACCAGATGGG 240
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CCGACCTCGTCAAGCGCTCCCGCGCCATCGACCCCTTCACCCCCTGCGACTTCAAGCACA 300
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGCTCACCCGCGAGGTGTTCGTCACCGTCTCCGGCCCCGCCGTCGCCACCCTCGCCGCCA 360
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCTTCGACTACACCGACGACGAGGACATCCTCAACCAGTGCGTCGAGGGCCTCATCTCCG 420
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCGCCCGGATCGCGCGCTACGGCCTCGAGGACGTCCTCGACGAGCTCCTCTGCTGCCTCT 480
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GCAAGTTCACCACGCTGCTCAACCCCTACGCCACCACCGAGGAGACGCTCTTCACCTTCA 540
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GCAATGAGCTCAAGCCCAGGATGGCCACGCTCGCGCTCTTCACCATCACCAACCGCTTCG 600
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GCGAGTCGGTGCGCGGCGCGTGGAAGAACGTCGTCGACTGCCTGCTCAAGCTCAAGCGCC 660
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCAAGCTGCTGCCGCCGTCGCTGGTCGACCAGGAGGGCGGCGCCGGCGCCGCCGTGAGCA 720
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CGGAGCGGCTGGGACACCGGGCCAAGTCGGAGTCCGGCGTCATCTTCCCGTCGTCGCACC 780
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GTGGCGCCGGGACGAGCAGGCACGTGTCCGGCATGATCGGGCGGTTCTCGCAGTTCCTGT 840
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CGCTGGACGCCGGCGGCGAGTCGCTGCTGTCGGTGGGGAGCGAGTTCGAGAACAACCTCA 900
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGATCATCCAGCAATGCCGGATCGGGAGCATCTTCACGGAGAGCGGGAAGCTGCCGGACG 960
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGTCGGTGCAGAACCTGGGGCGGGCGCTCATCTTCGCCGCCGGCGGCAAGGGGCAGAAGT 1020
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCAGCACGCCGGTGGAGGAGGAGGAGACGGTGGGCTTCTGCTGGGACCTCATCGCGGTCG 1080
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCTCGTCGGCGAACGTGCACCGCTTCACCACGTTCTGGCCGCAGCTGCACGACTGCTTCG 1140
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CCGCCGTGTCCCAGCTGCCGCTCTTCTCGCCGTGCCCGTTCGCCGAGAAGGCGATCGTGG 1200
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CGCTGTTCAGGGTCGCCGTGAGGCTGCTCTCCGGCGGCGGCGGGGACCGGATGGCGGAGG 1260
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGCTGGTGTTCAAGTCGATCAACCTGATGTGGAAGCTGGACAAGGAGATCCTGGACACCT 1320
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GCTGCGAAGGCATCTCGGAGTGCATCGTGAAGCTGCTGATGGAGTACGCCAGCAACGTGC 1380
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGACGCCGATCGGGTGGAAGACGGTGCTTCACCTGCTGTCCGTCACCGGGCGGCACCCGG 1440
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGACGTTCGACCAGTCGGTGGCCGCCATGATCAAGCTCATGAACGACGGCGCGCAGGTGG 1500
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TGACGCGGTTCAACTACGCGGCGTGCATCGAGGCCGCCTTCGGGTTCGCGGCGCTCAAGA 1560
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCAGCCCGCTCGACATCAGCACCAGGATCCTCCAGCTCATGGCCGACTCCGTCAACTGGC 1620
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TCATTTTATGGCACAAGTCCGGCTACTCCGACCCGGGCAACGCCTGGAGCAGCTCAAGCT 1680
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CGTCGTCGTCGGCGGCGGCGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGG 1740
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 CGACGAGCATGTTCATCAAGCTCGCGGAGGCGCTGCGCAAGACGAGCCTAGTCCGGCGAG 1800
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 AGGAGATACGGAACCAGGCGGTGGCGGAGCTGGGCCGAGCGTTCGCCCTGGCCGCCGCCG 1860
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 GCGAGCTCGAGCTGGGCCCGACGGGGTCGCTGGCGTGCTTCAACCTGGTCATCTTCGCCA 1920
consensus_4154#1 ------------------------------------------------------------
consensus_4154#0 TGGTGGACGACCTGCACGAGAAGACGCTGGAGTACTCGAGGAGGGAGGGGGCGGAGAGGG 1980
consensus_4154#1 ------------------------------------------------TTCTGGCTGGGG 12
** ***
consensus_4154#0 AGACCCGGAGCATGGAGGGGACGCTGGCGGCGGCGACGGAGCTGCTCGCCGACGTGTTCG 2040
consensus_4154#1 NTGCTCCGGC----GGCTGGACACGTGCATCAA-GTCGGACCTGGCGGCGGNCG------ 61
* * * * **** * ** * * **** *** ** * **
consensus_4154#0 TGCTGTTCCTGGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGA 2100
consensus_4154#1 -GCGGCGCC-GGCGTGATGCAGGAGCTGGTGCCGAGGATGCTGAAGCGGATGATCGTGGA 119
** * ** **************************************************
consensus_4154#0 GATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCA 2160
consensus_4154#1 GATGAAGGACAAGGGGGTGCTGGTCGCCATGGAAGGAGACGAGCTGTGGGAGATCACCCA 179
************************************************************
consensus_4154#0 CATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACT 2220
consensus_4154#1 CATCCAGATCCAGTGGATCGCTCCAGCTGTCATGGAGGAGCTCTTCCCTGATTGATTACT 239
************************************************************
consensus_4154#0 CACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAA 2280
consensus_4154#1 CACTTACTCACTGCAGTTAATTACTAGTGTTATTAAGTTAGAGGTTACTCTGATAACCAA 299
************************************************************
consensus_4154#0 TGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTA 2340
consensus_4154#1 TGTCATATATTAAAAAACGGAGACAGTATTATTGTTCAGTCTTTCTTTTTATTCTAACTA 359
************************************************************
consensus_4154#0 GGAATGTACACATTACCTCTATAACCATCTACGAAAG----------------------- 2377
consensus_4154#1 GGAATGTACACATTACCTCTATAACCATCTACGAAAGACTATGGCTTAGTTTTGGACTAA 419
*************************************
consensus_4154#0 -----------------------------------
consensus_4154#1 AATTAGGAATCAAAGACTAATGAGACTTTTAAAAA 454
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||