These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1167 fasta sequence [CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGCCTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGCCATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATTCAGACCACCATGTTAAACAAATTGCATCCTTGATGTGTACCATTTAGTCCATACAATATCAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGCTCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAGAGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC] [+] EMBL CB679066 [CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGCCTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGCCATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATTCAGACCACCATGTTAAACAAATTGCATCCTTGATGTGTACCATTTAGTCCATACAATATCAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGCTCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAGAGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCG ] [-] EMBL CB679065 [ TTTAACGTGCTCAAAGTTCCCGTATATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAGTTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC] consensusID : consensus_4159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1012 fasta sequence [AAGCCTGATTCTGAAAAAACAAATTAGCAGTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGTGATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAAAGGGTGCGTTTCTAGCAAGCGCAGAGAAACTGAGCAATAGGGGCATGTGGCATACTTTCAACAGGTCTTCCCCTCCAATGATTCCGAACTTCCAAAGGGCACAATTATGGCATTGAACTGCACTGCCATCCTCACAAATTCAGTCTGTTCTAGCCAACACAGTTTGTGCCTTCGCCCATTCTATTTTGTTGCTACCAACATATGTCCAGTGAGGTTACTTATATCAGTAGAGGCCCTTAAGCCACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG] [-] EMBL AK110949 [AAGCCTGATTCTGAAAAAACAAATTAGCAGTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGTGATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAAAGGGTGCGTTTCTAGCAAGCGCAGAGAAACTGAGCAATAGGGGCATGTGGCATACTTTCAACAGGTCTTCCCCTCCAATGATTCCGAACTTCCAAAGGGCACAATTATGGCATTGAACTGCACTGCCATCCTCACAAATTCAGTCTGTTCTAGCCAACACAGTTTGTGCCTTCGCCCATTCTATTTTGTTGCTACCAACATATGTCCAGTGAGGTTACTTATATCAGTAGAGGCCCTTAAGCCACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4159#0 CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGC 60 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGC 120 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATT 180 consensus_4159#1 ---------------------------------------AAGCCTGATTCTGAAAAAA-- 19 **** * * **** consensus_4159#0 CAGACCACCATGTTAAACAAATTG-CATCCTTGATGTGTACCATTTAGTCCATACAATAT 239 consensus_4159#1 CAAATTAGCA-GTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGT 78 ** * * ** ** * *** *** ** ** *** *** * * consensus_4159#0 CAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGC 299 consensus_4159#1 -GATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAA-------AGGGTGC--GT 128 * * ** * *** * * ** * ** * * ** ** * * consensus_4159#0 TCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAG 359 consensus_4159#1 TTCTAGCAAGC-GCAGAGAAACTGAGCA-ATAGGGGCATGTGGCATACTTTCAACAGGTC 186 * ** ** * * ** * *** * ** * * ***** * ** consensus_4159#0 AGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTC 419 consensus_4159#1 TTCCCCTCCAATGATTCCGAACTTCCAAAGG-GCACAATTATGGCATTGAACTGCACTGC 245 **** * * * ** ** ** ** * * *** * ** * * * * consensus_4159#0 TATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATA 479 consensus_4159#1 CATCCTCACAAATTCAGTCTGTTCTAGCCAACACA---GTTTGTGCCTTCGCCCATTCTA 302 ** * ** * * * ** * * ** ** *** ** ** consensus_4159#0 CCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCAT--GGC 537 consensus_4159#1 TTTTGTTGCTACCAACATATGTCCAGTGAGGT-TACTTATATCAGTAGAGGCCCTTAAGC 361 * * * * * * * ** * ** * * * * * ** * * ** consensus_4159#0 AAATTATGAAGTTTCTGAATACTTCATATTTAGCT---AGATCTCACCTAGAATGGAGCA 594 consensus_4159#1 CACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCA 421 * ** * *** * ** ** ** * *** ** ** * ************* consensus_4159#0 AGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGT 654 consensus_4159#1 AGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGT 481 ****************************************** ***************** consensus_4159#0 GGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCG 714 consensus_4159#1 GGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCG 541 ************************************************************ consensus_4159#0 ATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATC 774 consensus_4159#1 ATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATC 601 *********** ***** ****************************************** consensus_4159#0 AGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCT 834 consensus_4159#1 AGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCT 661 ************************************************************ consensus_4159#0 TCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTG 894 consensus_4159#1 TCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTG 721 ****************************************** ***************** consensus_4159#0 GCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCG 954 consensus_4159#1 GCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCG 781 ************************************************************ consensus_4159#0 ATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGA 1014 consensus_4159#1 ATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGA 841 ************************************************************ consensus_4159#0 CGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGAT 1074 consensus_4159#1 CGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGAT 901 ************************************************************ consensus_4159#0 TCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGG 1134 consensus_4159#1 TCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGG 961 ************************************************************ consensus_4159#0 AGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC------------------ 1167 consensus_4159#1 AGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG 1012 *************************** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||