cluster # 417

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Oryza sativa
cluster # 417 cluster # 417 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_417#0 length = 1586 sequences # 1

consensus_417#1 length = 422 sequences # 1

consensusID : consensus_417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1586
fasta sequence

                              [CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGTACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCACATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAATCTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCCAGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTCGAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGATTTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAAATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTAAAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCCACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTCTCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCACCATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGAGAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATGGCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTT]

[+] EMBL AK106271             [CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGTACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCACATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAATCTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCCAGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTCGAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGATTTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAAATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTAAAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGAATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCACACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACACACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAGAACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAGAAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTGGAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAGATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCCACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTCTCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCACCATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGAGAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATGGCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTT]




>consensus_417#0
CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGT
ACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCA
CATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAAT
CTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCC
AGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTC
GAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGAT
TTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAA
ATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTA
AAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGA
ATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCA
CACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACAC
ACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAG
AACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAG
AAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTG
GAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAG
ATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCC
ACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTC
TCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCAC
CATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGA
GAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATG
GCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAG
AAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGAT
GATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTT
TGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGT
GGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAG
TTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAA
GTGCTGAAGATATTTTTGTTGTTCTT

consensusID : consensus_417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [GACTGGACTGAAGGGAGTAGAAATGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA]

[+] EMBL CF329738             [GACTGGACTGAAGGGAGTAGAAATGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA]




>consensus_417#1
GACTGGACTGAAGGGAGTAGAAATGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCA
GCTAGGGTGCAAGAGAAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCAC
AAGAACAATAGCGATGATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCA
TTTTGTTTGTAATTTTGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATT
CTAGCTTTGAACTGTGGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTC
ATGTATCATATAAAGTTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTC
TTTGGGCAACTGGAAGTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_417#0      CAAACAGAGAACCTTTCAACTCTACAGCACGCTAATGATAACTTAAAGAAGAACAATTGT 60
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ACCTTGACTGAGCAATTCGAAGTAATCAAGATTGAGCTGCAGGAGGAGGTTAAGATGGCA 120
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      CATGAAGAGAAGGATGCCACACTAACACAACTAGAGAAGTCAGAGGATTCTATCAAGAAT 180
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      CTTGAAAGTGAGTTGGCACAGCTGAAGGAGGAACTATCAGTTCAGATGGAAAGCAATTCC 240
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      AGCTTGAACAAGCAATTGGAGGAGGCAATATTGAAAGTGTCAAACTTAACTGAGGAGCTC 300
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      GAGACAGTTCAAGCTGAGACTGCCAGTAAAATTAATGACATGGAAACTAACACAAAAGAT 360
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      TTGGTAAATACAATTGTTCTATTATCTTCTCAGAAGAACAAAGTGGAGGAGCATATGAAA 420
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ATTATTACCGAAGCATGCATGGAGAAAATGTCATTTATGAAAGATTTCGAAGATCAAGTA 480
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      AAGCAAAAAATTACAGATCGTGAGATAGCAATTGCTTGCCTCCAGCAGAGCCTCAGAGGA 540
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ATTATTGGCAGCTGCCAGAGACTCCAGTATGCATATGGAGAGGTATCCACAAAGGCATCA 600
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      CACCTTGAGGTACTTAGGAGGAATCACCTCGTGCAGATAGATACATTGGAGAACAAACAC 660
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ACAGAAATTATGGAGAAACATCGTCATTTAGGGGAGGAAAATACATCTGCAAACAAAGAG 720
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      AACAGAAAGCTACAAAATCATGTCCAAGAACTTGAAGCTCAGCTCCAGCTAGCCAGGCAG 780
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      AAGCTTAGAGTTACTGAGGCAGAAAGCAAAAGCAAAGAAGACAGCTATGTGATGGCAGTG 840
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      GAAAAATCACATAGAGAGATCCAGTATCTTGAACAGAAAATACAGAAATATTCTGGACAG 900
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ATCAACTCACTGGAAGAAACTCTCGTACAAATAAAAGGAAATGCTGAGTCCGGAACCTCC 960
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      ACACTGGTTGATCAATTGGATCAGCTAGAATCACATTTCAATAAGAGTTTTTCCCACTTC 1020
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      TCTGCCCGTTCATTTGCATGCAGTGAAGAGCTCAAGCTCTTAAGGAACAGGTTACAGCAC 1080
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      CATCTTGCTGAACAGAAAGAATTGGTCAAGAAGAATGATGTGCTAGGTATGAGGTTGAGA 1140
consensus_417#1      ------------------------------------------------------------
                                                                                 

consensus_417#0      GAGAAAGAAAACGTTTTGTCAGAAATGGTGAGAAGTGCTTCCGAGGCGAAGAAGAAGATG 1200
consensus_417#1      --------------------------------------------GACTGGACTGAAGGGA 16
                                                                 * *      ****   

consensus_417#0      GCTCACCTTGAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAG 1260
consensus_417#1      GTAGAAAT-GAGAAGACAATTGACGAGAAAGAAGAAGAGATATCAGCTAGGGTGCAAGAG 75
                     *   *  * ***************************************************

consensus_417#0      AAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGAT 1320
consensus_417#1      AAAAGAGAAGCTATCAAGCAACTGAGTAATGCAATTATTTACCACAAGAACAATAGCGAT 135
                     ************************************************************

consensus_417#0      GATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTT 1380
consensus_417#1      GATCTGATCCGCTACATTCGCAACCATAACCGCCGTCGCCTTCCATTTTGTTTGTAATTT 195
                     ************************************************************

consensus_417#0      TGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGT 1440
consensus_417#1      TGATTAAAAATAGTAATGCCAGTAGATGTAAAGCTTGCGTATATTCTAGCTTTGAACTGT 255
                     ************************************************************

consensus_417#0      GGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAG 1500
consensus_417#1      GGCAGAAAGGGAACTGTTGCCAGATATTTTTTTTCTCATCATCTCATGTATCATATAAAG 315
                     ************************************************************

consensus_417#0      TTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAA 1560
consensus_417#1      TTCTGAAATACTCATCGAAGTAGTCAGACAGGTTGCCCTTTATTCTTTGGGCAACTGGAA 375
                     ************************************************************

consensus_417#0      GTGCTGAAGATATTTTTGTTGTTCTT--------------------- 1586
consensus_417#1      GTGCTGAAGATATTTTTGTTGTTCTTTGCTCTTGTCAAAAAAAAAAA 422
                     **************************