cluster # 4177

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Oryza sativa
cluster # 4177 cluster # 4177 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4177#0 length = 781 sequences # 2

consensus_4177#1 length = 313 sequences # 1

consensusID : consensus_4177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence

                              [CTCGCCATCACGCAGATCGACATGGCTGCTGCTTCTCTCCGTCTGGTCGTCGTCGCCGCCGCCGTCGCGATCTCCCTCCGGGGCGCCGCCGCCACGGCGGTGACCGTGGAGGACGCGTGCCGGCACACGAGGCACGAGGCGTACTGCGTGAAGGCGCTGTCGGCGAGGCCGGAGAGCAGGGCGGCGGCGTTGGACATGCCGGCGCTGGCGGAGGCGGCGCTGTCGATGGCGGCGGAGAGCGGGGCGGCGGCGACGTCGTTCGTGAGGAACCTGGCGAAGATGCCCGGCGGCATGCCGCCGGAGTGCCTGGAAGGGTGCGTGGCGAAGTTCCAGGAGGCGGTGGCGGAGCTGAGGCGGTCCGAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGACGGAGGCCAGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCGGAGATCGCCGACAGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACCAATGCGTCCATGAGCAAACATCCGTAGCAAATCATCGTGTATAACAAAAACGAGATTTGGAGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTAAAGATTGAACACGAGATCTCGGAATCGGGATTGAAACCTATATACCCTTTACCACTGTACTATCATGTGCATTTCTATGTATCCTCGTGTATATATACGACCACCAAATTCTCTCTTGTTAAAAAAAAA]

[+] EMBL AK109894             [CTCGCCATCACGCAGATCGACATGGCTGCTGCTTCTCTCCGTCTGGTCGTCGTCGCCGCCGCCGTCGCGATCTCCCTCCGGGGCGCCGCCGCCACGGCGGTGACCGTGGAGGACGCGTGCCGGCACACGAGGCACGAGGCGTACTGCGTGAAGGCGCTGTCGGCGAGGCCGGAGAGCAGGGCGGCGGCGTTGGACATGCCGGCGCTGGCGGAGGCGGCGCTGTCGATGGCGGCGGAGAGCGGGGCGGCGGCGACGTCGTTCGTGAGGAACCTGGCGAAGATGCCCGGCGGCATGCCGCCGGAGTGCCTGGAAGGGTGCGTGGCGAAGTTCCAGGAGGCGGTGGCGGAGCTGAGGCGGTCCGAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGACGGAGGCCAGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCGGAGATCGCCGACAGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACCAATGCGTCCATGAGCAAACATCCGTAGCAAATCATCGTGTATAACAAAAACGAGATTTGGAGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTAAAGATTGAACACGAGATCTCGGAATCGG                                                                                                     ]
[+] EMBL AU172654             [                                                                                                                                                                                                                                                                                                                                                                        GAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGACGGAGGCCAGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCGGAGATCGCCGACAGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACCAATGCGTCCATGAGCAAACATCCGTAGCAAATCATCGTGTATAACAAAAACGAGATTTGGAGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTAAAGATTGAACACGAGATCTCGGAATCGGGATTGAAACCTATATACCCTTTACCACTGTACTATCATGTGCATTTCTATGTATCCTCGTGTATATATACGACCACCAAATTCTCTCTTGTTAAAAAAAAA]




>consensus_4177#0
CTCGCCATCACGCAGATCGACATGGCTGCTGCTTCTCTCCGTCTGGTCGTCGTCGCCGCC
GCCGTCGCGATCTCCCTCCGGGGCGCCGCCGCCACGGCGGTGACCGTGGAGGACGCGTGC
CGGCACACGAGGCACGAGGCGTACTGCGTGAAGGCGCTGTCGGCGAGGCCGGAGAGCAGG
GCGGCGGCGTTGGACATGCCGGCGCTGGCGGAGGCGGCGCTGTCGATGGCGGCGGAGAGC
GGGGCGGCGGCGACGTCGTTCGTGAGGAACCTGGCGAAGATGCCCGGCGGCATGCCGCCG
GAGTGCCTGGAAGGGTGCGTGGCGAAGTTCCAGGAGGCGGTGGCGGAGCTGAGGCGGTCC
GAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGACGGAGGCC
AGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCG
GAGATCGCCGACAGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACC
AATGCGTCCATGAGCAAACATCCGTAGCAAATCATCGTGTATAACAAAAACGAGATTTGG
AGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTAAAGATTGA
ACACGAGATCTCGGAATCGGGATTGAAACCTATATACCCTTTACCACTGTACTATCATGT
GCATTTCTATGTATCCTCGTGTATATATACGACCACCAAATTCTCTCTTGTTAAAAAAAA
A

consensusID : consensus_4177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [TCCGTCTGGTCGTNNTCGCCGACGCCGTCGCGATCTCCCTCCGGGGCGCCGNCGCCACGGGGTGNACCGTGGAGGACGCGTGCCGGCACACGAGGCACGAGGCGTACTGCTTNAAGGCNCTGTCGGCNANNCCGGAGAGCAGGGCGGCGGCGTTGGACATGCCGGCNCTGGCGGAGGCGGCGNTGTCNATGGCGGCGGAGAGCGNNGCGGCGGCGANGTCTTTCGTAAGGAACCTGGCGAAGATTTCCGGCGGCATGCCGCGGATTTGCCTGGAAGNNTGCTTGGCGAAGTTCCAGGAGGCGGTGGCGGACTT]

[+] EMBL AU101232             [TCCGTCTGGTCGTNNTCGCCGACGCCGTCGCGATCTCCCTCCGGGGCGCCGNCGCCACGGGGTGNACCGTGGAGGACGCGTGCCGGCACACGAGGCACGAGGCGTACTGCTTNAAGGCNCTGTCGGCNANNCCGGAGAGCAGGGCGGCGGCGTTGGACATGCCGGCNCTGGCGGAGGCGGCGNTGTCNATGGCGGCGGAGAGCGNNGCGGCGGCGANGTCTTTCGTAAGGAACCTGGCGAAGATTTCCGGCGGCATGCCGCGGATTTGCCTGGAAGNNTGCTTGGCGAAGTTCCAGGAGGCGGTGGCGGACTT]




>consensus_4177#1
TCCGTCTGGTCGTNNTCGCCGACGCCGTCGCGATCTCCCTCCGGGGCGCCGNCGCCACGG
GGTGNACCGTGGAGGACGCGTGCCGGCACACGAGGCACGAGGCGTACTGCTTNAAGGCNC
TGTCGGCNANNCCGGAGAGCAGGGCGGCGGCGTTGGACATGCCGGCNCTGGCGGAGGCGG
CGNTGTCNATGGCGGCGGAGAGCGNNGCGGCGGCGANGTCTTTCGTAAGGAACCTGGCGA
AGATTTCCGGCGGCATGCCGCGGATTTGCCTGGAAGNNTGCTTGGCGAAGTTCCAGGAGG
CGGTGGCGGACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4177#0      CTCGCCATCACGCAGATCGACATGGCTGCTGCTTCTCTCCGTCTGGTCGTCGTCGCCGCC 60
consensus_4177#1      -------------------------------------TCCGTCTGGTCGTNNTCGCCGAC 23
                                                           *************  ****** *

consensus_4177#0      GCCGTCGCGATCTCCCTCCGGGGCGCCGCCGCCACGGCGGTGACCGTGGAGGACGCGTGC 120
consensus_4177#1      GCCGTCGCGATCTCCCTCCGGGGCGCCGNCGCCACGGGGTGNACCGTGGAGGACGCGTGC 83
                      **************************** ******** *   ******************

consensus_4177#0      CGGCACACGAGGCACGAGGCGTACTGCGTGAAGGCGCTGTCGGCGAGGCCGGAGAGCAGG 180
consensus_4177#1      CGGCACACGAGGCACGAGGCGTACTGCTTNAAGGCNCTGTCGGCNANNCCGGAGAGCAGG 143
                      *************************** * ***** ******** *  ************

consensus_4177#0      GCGGCGGCGTTGGACATGCCGGCGCTGGCGGAGGCGGCGCTGTCGATGGCGGCGGAGAGC 240
consensus_4177#1      GCGGCGGCGTTGGACATGCCGGCNCTGGCGGAGGCGGCGNTGTCNATGGCGGCGGAGAGC 203
                      *********************** *************** **** ***************

consensus_4177#0      GGGGCGGCGGCGACGTCGTTCGTGAGGAACCTGGCGAAGATGCCCGGCGGCATGCCGCCG 300
consensus_4177#1      GNNGCGGCGGCGANGTCTTTCGTAAGGAACCTGGCGAAGATTTCCGGCGGCATGCCGCGG 263
                      *  ********** *** ***** *****************  *************** *

consensus_4177#0      GAGTGCCTGGAAGGGTGCGTGGCGAAGTTCCAGGAGGCGGTGGCGGAGCTGAGGCGGTCC 360
consensus_4177#1      ATTTGCCTGGAAGNNTGCTTGGCGAAGTTCCAGGAGGCGGTGGCGGACTT---------- 313
                         **********  *** ****************************  *          

consensus_4177#0      GAGGCGGCGATGGAGGTGCGCCATGACGCCGCCGGCGCCAAGGCGTGGGTGACGGAGGCC 420
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      AGGGCGGACGGCGAGACGTGCATGGACGAGTGCCGGATGACGGAGGGCGGCGCCGCCCCG 480
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      GAGATCGCCGACAGGATCGACGAGCTCGCCAAGCTCTGCTCCATCGCCCTCGCCCTCACC 540
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      AATGCGTCCATGAGCAAACATCCGTAGCAAATCATCGTGTATAACAAAAACGAGATTTGG 600
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      AGGGGGAGACCTCTATCCAAACATTTATTAAAAAGAAATTATGAGCGTGTTAAAGATTGA 660
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      ACACGAGATCTCGGAATCGGGATTGAAACCTATATACCCTTTACCACTGTACTATCATGT 720
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      GCATTTCTATGTATCCTCGTGTATATATACGACCACCAAATTCTCTCTTGTTAAAAAAAA 780
consensus_4177#1      ------------------------------------------------------------
                                                                                  

consensus_4177#0      A 781
consensus_4177#1      -