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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1222 fasta sequence
[CTGCCCTTGTTCTTTTCTTCTTCTCTCTCTCTGCTCTGCCTCTGTCTTGGTTTGCTTTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAA--------GGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTTCCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAGGTAGATGAAGTTTTCGAAGACGTTAAGGCCATTTTTGCTCAGTTGAACAATCAGAAAATTCATGGTGGCCAGCAAGCTAGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAACGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGACAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTAGAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTACTACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAGTGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGATTCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGAGTGGGG]
[+] EMBL AK066989 [CTGCCCTTGTTCTTTTCTTCTTCTCTCTCTCTGCTCTGCCTCTGTCTTGGTTTGCTTTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAA GGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTTCCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAGGTAGATGAAGTTTTCGAAGACGTTAAGGCCATTTTTGCTCAGTTGAACAATCAGAAAATTCATGGTGGCCAGCAAGCTAGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAACGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGACAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTAGAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTACTACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAGTGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGATTCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGAGTGGGG]
[+] EMBL CA755769 [ GCCTGCATGACTGCTTGCACCTAGCAACTTCCTCTTGCCAAGAACGGGCGGTCGCAGCAATGTGACATGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGTTCATTGACTGCTCANAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAG ]
consensusID : consensus_4181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence
[AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATATGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACATGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGNTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTTNCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAGGTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAAATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAATGAATCNTTGGA]
[+] EMBL CA764457 [AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATATGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACATGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGGCTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAGAATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGTGGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACACATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACAATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTACTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGAAATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTGNTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGAGATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTTNCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAGGTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAAATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAATGAATCNTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4181#0 ---------------CTGCCCTTGTTCTTTTCTTCTTCTCTC----TCTCTGCTCTGCCT 41
consensus_4181#1 AGTCATTTTGCTCTATCAATTCTACTATTTACGTGATCACACAGGCTCTCCATACAAATA 60
* * *** * * ** * * **** *
consensus_4181#0 CTGTCTTGGTTTGCT------TTGCTTCTTCTCGATGCCATCGATGCCTGCATGACTGCT 95
consensus_4181#1 TGATGTGAAATTTCTGATGAATTGCCTCTTGTTCATACTCATGACTTGGGCAGTGTGACA 120
* * ** ** **** **** * ** * ** *** *
consensus_4181#0 TGCA------CCTAGCAACTTCCTCTTGC--CAAGAACGGGCGGTCGCAGC-----AAGG 142
consensus_4181#1 TGTGAGGCTCTCTCTCTCTCTCTGCTTGCTTCATTAATTTTGTGTTTCAGCCTTTCAGGG 180
** ** * ** ***** ** ** ** **** * **
consensus_4181#0 CTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAG 202
consensus_4181#1 CTTGTTCAGCTTGAACGCCGGCTCATCATTTCAAAGGTATAGATGGCACACGCAAACAAG 240
************************************************************
consensus_4181#0 AATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGT 262
consensus_4181#1 AATCACATTGAGTCATTTCCACCTCCTGGGAAAAAGATAACAATCGTGTTCGTCATAGGT 300
************************************************************
consensus_4181#0 GGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACA 322
consensus_4181#1 GGCCCTGGCAGTGGCAAAGGCACTCAATGTGCCAAAATTGTTAAGCAGTTTGGCTTTACA 360
************************************************************
consensus_4181#0 CATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACA 382
consensus_4181#1 CATCTGAGTGCTGGTGATCTCCTTCGTGAAGAAGCAAAATATGATACTGAACAAGGTACA 420
************************************************************
consensus_4181#0 ATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTA 442
consensus_4181#1 ATGATCAAGAATCTCATGAATGAAGGGAAGCTTGTGTCATCTGATCTCATCGTTAAGCTA 480
************************************************************
consensus_4181#0 CTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGA 502
consensus_4181#1 CTATTTAAGGCCATGCGAGAAAGTGGGAATGATAAGTTCCTTGTTGATGGATTTCCACGA 540
************************************************************
consensus_4181#0 AATGAAGAAAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTG 562
consensus_4181#1 AATGAAGAGAATCGACATGCGTATGAAAATATTATCCACATTGAGCCAGAGTTCCTGCTG 600
******** ***************************************************
consensus_4181#0 TTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGA 622
consensus_4181#1 NTCATTGACTGCTCAAAGGAAGAGATGGAGCGGCGCATTTTGAACCGAAACCAGGGAAGA 660
***********************************************************
consensus_4181#0 GATGATGACAACATCGACACTATTAGGAGACGCTTTGATGTTTTTCAGCAGCAAACTCTT 682
consensus_4181#1 GATGATGACAACATCGACACTATTANGAGACGCTTTGATGNTTTTCAGCAGCAAACTCTT 720
************************* ************** *******************
consensus_4181#0 CCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCAGAAAGGTTGATGGTAACCGACAG 742
consensus_4181#1 NCAGTTATTCAGTACTATGAGAAAAGGGGGAAACTCANAAAGGNTGATGGTAACCGACAG 780
************************************ ***** ****************
consensus_4181#0 GTAGATGAAGTTTTC-GAAGACGTTAAGGCCATTTTTG-CTCAGTTGAACAATCAGAAAA 800
consensus_4181#1 GTANATGAAGTTTTNCNAAAACGTTAANGNCATTTTTGGCTCAGTTGAACAATCANAAAA 840
*** ********** ** ******* * ******** **************** ****
consensus_4181#0 -TTCATGG-TGGCCAGCAAGCT--AGTGGTTTGAGCAGAGCACAAATGAATCCATTGAAA 856
consensus_4181#1 ATTCATGGGNGGCCAGCAAGCCTAANGGGTTTGAGCAGAGCCCAA-TGAATCNTTGGA-- 897
******* *********** * ************** *** ****** * **
consensus_4181#0 CGTTGGTTCTTTGACTTTTTCTGCGGTTGCTTTGGGACTAAAGAAGAAGCAAGAAACTGA 916
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 CAGTAGAAATGAAAGTGACATGATCTCTCTGCGTGTGTGTGGTGGACTGTGGAGTACCTA 976
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 GAGGCTGGTGCAGAATTTCAGAAAGAGAGAGAACAAAAAACTTGTGATGTCTTGAGTTAC 1036
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TACTAGTATATATGGTGATGGTGTGTTGTGCTAGTTGACTGTTTCGGTTCAATAGTCTAG 1096
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TGTGACCTGTGAAGATACTGCATGTTGGCTTGTTTGGTTTGTTGATTGCAGCTTCGAGAT 1156
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TCATTATTATTGTTGGCTAAAAAATCTGTGTGATTTAACGTTAGTTAATAATAAAAGAGA 1216
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 GTGGGG 1222
consensus_4181#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||