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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence
[GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAAGGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCCTACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCGCAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTTATCGGTTCTGGTGGCATGCCATCGTCACATTCTGCC-ACAG-TTACAGCACTAGCTGTA-GCGA-TTGGCTT-CCAAGATGGTTTTGGCTGTG-CCCTATTTGCGACAGCAGCAATATTCGCAAGT-GTGGTTATGTACGATGCTT-CTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGT-GTTGAATCAAAT-AGTCT-GCGAACTTCCTTCT-GAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGGGAATTGCTAGCATTTGAA-GGGGACTTGAGAAGAAGAAGAAGAGGCTTCTCCAGTGTCCTGTCACTTAGGTATTGGTAAGATTTGTAACAATGAGATGTTGTGGTGCTGTTGAAGTTTTGACGGCACGTGATACATGTATGTTCAGGTGAT-GTACTTCTCAGGATTTTTGTACAGAATATTTG-TTCGATAACTTCATTATTCTGGTGAAATCTAAAATGTGAGTATGTCAGTGATGGTTGTTGATCTACCATTTTGT]
[+] EMBL AK070266 [GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAAGGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCCTACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCGCAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTTATCGGTTCTGGTGGCATGCCATCGTCACATTCTGCC ACAG TTACAGCACTAGCTGTA GCGA TTGGCTT CCAAGATGGTTTTGGCTGTG CCCTATTTGCGACAGCAGCAATATTCGCAAGT GTGGTTATGTACGATGCTT CTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGT GTTGAATCAAAT AGTCT GCGAACTTCCTTCT GAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGGGAATTGCTAGCATTTGAA GGGGACTTGAGAAGAAGAAGAAGAGGCTTCTCCAGTGTCCTGTCACTTAGGTATTGGTAAGATTTGTAACAATGAGATGTTGTGGTGCTGTTGAAGTTTTGACGGCACGTGATACATGTATGTTCAGGTGAT GTACTTCTCAGGATTTTTGTACAGAATATTTG TTCGATAACTTCATTATTCTGGTGAAATCTAAAATGTGAGTATGTCAGTGATGGTTGTTGATCTACCATTTTGT]
[+] EMBL BI806710 [ caAGGCCATCAAGNTNTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAA CA CTAATCGGTTCTGGT GCATGCCATCGTCACATTCTGCCAACAGTTTACAGCACTAGCTGTATGCGATTTGGCTTCCCAAGATGG TTTGGCTGTGCCCCTATTTGCGACAGCAGCAATATTCGCAAGTGGTGGTTATGTACGATGCTTGCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGTGGTTGAATCAAATGAGTCTGGCGAACTTCCTTCTGGAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTA GCCATACTCCAACCCAGGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGGTGGATGGGAATTGCTAGCATTTGAACGGGGACTTGAGAAGAAGAAGAAGAGGCTTCTCCAGTGTCCTGTCACTTAGGTATTGGTAAGATTTGTAAC ATGAGAT TTGTGGT CTGTTGAAGTTTTGACGGCACGTGATACATGTATGTTCAGGTGATGGTACTTCTCAGGATTTTTGTACAGAATATTTGNTTCGATACCTcaaaaaaaa ]
consensusID : consensus_4194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAAGGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCCTACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCGCAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTTATCGGTTCTGGTGGCCATCGTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGGTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGTGTTGAATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGGTTTGCTCAAATGCCATTTTCACTAATCATTTTATTATACTGCACCAATCGAAAGCGATGTCATATTGATTGTGCTGATTACGTGGATACCAACTGAACCACAAACTGGCTGTGCCAATGTCATCAGATCCCCTTTTACCTAGCACCCCATGCTTATCAGTTATCGTCACATCATGCAGCTTCGTCAGCAGTGCTACCATCTTCTTGTTTCTTTCAGTCATGGCCAACTATTTTGT]
[+] EMBL AK121605 [GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAAGGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCCTACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCGCAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTTATCGGTTCTGGTGGCCATCGTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCGATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGTGTGGTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGTGTTGAATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGTGAACTCTTAGGCCATACTCCAACCCAGGTTTGCTCAAATGCCATTTTCACTAATCATTTTATTATACTGCACCAATCGAAAGCGATGTCATATTGATTGTGCTGATTACGTGGATACCAACTGAACCACAAACTGGCTGTGCCAATGTCATCAGATCCCCTTTTACCTAGCACCCCATGCTTATCAGTTATCGTCACATCATGCAGCTTCGTCAGCAGTGCTACCATCTTCTTGTTTCTTTCAGTCATGGCCAACTATTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4194#0 GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAA 60
consensus_4194#1 GCGAGGAGAGGGAAGGAAGGAGGGAGGGAAGGGACGCACCTTGGGGGGTGGGAAGGAGAA 60
************************************************************
consensus_4194#0 GGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCC 120
consensus_4194#1 GGGAGAGCCATGGGCGACGACGGTGGTGGTGATGGCGGCGCCTCCTCCGCGGGATTCTCC 120
************************************************************
consensus_4194#0 TACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCG 180
consensus_4194#1 TACTTCGCCGTCTTCCACAACTACCCCCTCGTCGCCGCCTTGCTGGGCTTCGCCGTCGCG 180
************************************************************
consensus_4194#0 CAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTT 240
consensus_4194#1 CAGTCCATCAAGTTCTTCGTCACCCGGTATAAGGAGAACAGATGGGATCCTAAGCAGCTT 240
************************************************************
consensus_4194#0 ATCGGTTCTGGTGGCATGCCATCGTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCG 300
consensus_4194#1 ATCGGTTCTGGTGGC----CATCGTCACATTCTGCCACAGTTACAGCACTAGCTGTAGCG 296
*************** *****************************************
consensus_4194#0 ATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGT 360
consensus_4194#1 ATTGGCTTCCAAGATGGTTTTGGCTGTGCCCTATTTGCGACAGCAGCAATATTCGCAAGT 356
************************************************************
consensus_4194#0 GTGGTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGTGTTG 420
consensus_4194#1 GTGGTTATGTACGATGCTTCTGGTATCAGATTACATGCTGGAAAGCAAGCAGAGGTGTTG 416
************************************************************
consensus_4194#0 AATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGT 480
consensus_4194#1 AATCAAATAGTCTGCGAACTTCCTTCTGAACATCCCTTGTCTGAAACAAGACCATTGCGT 476
************************************************************
consensus_4194#0 GAACTCTTAGGCCATACTCCAACCCAGGTTGTTGCTGGAGCTTTGCTTGGGTCTATGCTA 540
consensus_4194#1 GAACTCTTAGGCCATACTCCAACCCAGGTT--TGCTCAAATGCCATTTTCACTAATCATT 534
****************************** **** * ** ** *
consensus_4194#0 GCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTTGAAGG 600
consensus_4194#1 TTATTA-TACTGCACCAATCGAAAGCGATGTCATATTG---ATTGTGCTGATT----ACG 586
* * * *** * * * *** ** ** ***** * * *
consensus_4194#0 TGGATGGGAATTGCTAGCATTTGAAGGGGACTTGAGAAGAAGAAGAAGAGGCTTCTCCAG 660
consensus_4194#1 TGGATACCAACTG-----AACCACAAACTGGCTGTGCCAATGTCATCAGATCCCCTTTTA 641
***** ** ** * * ** * * * * **
consensus_4194#0 TGTCCTGTCACTTAGGTATTGGTAAGATTTGTAACAATGAGATGTTGTGGTGCTGTTGAA 720
consensus_4194#1 CCTAGCACCCCATGCTTATCAGTTATCGTCACATCATGCAGCTTCGTCAGCAGTGCTACC 701
* * * * *** ** * * * ** ** * * ** *
consensus_4194#0 GTTTTGACGGCACGTGATACATGTATGTTCAGGTGATGTACTTCTCAGGATTTTTGTACA 780
consensus_4194#1 ATCTTCTTGTTTCT---TTCAGTCATGGCCAACTATTTTGT------------------- 739
* ** * * * ** *** ** * * *
consensus_4194#0 GAATATTTGTTCGATAACTTCATTATTCTGGTGAAATCTAAAATGTGAGTATGTCAGTGA 840
consensus_4194#1 ------------------------------------------------------------
consensus_4194#0 TGGTTGTTGATCTACCATTTTGT 863
consensus_4194#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||