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Oryza sativa
cluster # 4199 cluster # 4199       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4199#0 length = 2117 sequences # 3  

consensusID : consensus_4199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2117
fasta sequence
                              [CCCCTCTTCGCCTCTCCTCGCTGCTGTTATATCCGCTTTCCTCTCCTCCTCCTCCTATCCCCCCTCTCCTCCTGCTCCTCGGCCTCCTCCCCTAGATGCCAGCCGCGGCCTGACCCTCACCGCTGGGGAGCCCCCCTCCCATTCTTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAAGCACGTCCTCAAGACTCCCAGAGCCAGAAGCGCATGTGCCATCGTTACAATCTGCTCCTCCTAGTTTTAGGAACAAGGCTAAAATCCACCAATCGGAAAAGAAAGCTTCTTACAGCAGAGCGCGCGTGCTGTCTGCTCCTTCCAGCCTAATTGTGGTTGATCAGGATGGTCTTCCATATGCCGAATTCGATGATCAAGATGACTCCAGGGGCAAGGGAGGTTCTATAAAGGGCCACC-GTTTCTCTAATCCACTGCCCCTTCCTCTCCCATCACCAGAAGGAAAATTATTGAGGAACTTTGGCAGCTTCAAAGCCATCAATGCAAGTGGACCACTCGATGCTTCAGGCCCTCTGCCACTTCCTCCAAAGAAGTGTGATGGGCTTAAGAATTTCTCCTATGAGGAACTTTCATCAGCTTGCCAATGGTTTTCTGGTGACCAGTGTGTTTCCGAAAGTTTGACATCAACATCATACAAGGCGTCCTTTAGGGATGATTTTACCGACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAGAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATGAAAGGATGTTGGTCTATGAGCGACTCCATCATGGCAGCTTAGATAAACTACTCTTTGGAAGATCGGATGGTCGTTTCATGGACTGGTCAGCACGTTTGAAGGTTGCTCTTGGTGCTGCTAGAGGCCTGGCTTTCCTACATGATGAAGGGCCTTTTCAGGCCATGTACAATGACTTCTCAACCTCAAACATCCAAATTGACAAAGATTTCACTGCAAAGCTATCAGGATATGGATGTGTTGGATTCAATACCGAGGAGGAAATATCAAATGCATCTGTGGCTGCTGCAAACCTCTCAGTGGAAACCTTGGAGAAAGGTGTACTGACTCCCAAGAGCAACGTATGGTGCTTTGGAGTTGTCCTGCTGGAGCTAATAACAGGAAGGAAGAACCTTGATGTCCGTTCCTCAAAAGAAGAACGCAATATTGTCAAGTGGAGTAGGCCTTTCCTCACCGATGATAGTCGCCTATCGTTAATCATGGACTCCCGTATAAAAGGACGCTTCCCTACCAAGGCTGCTCGGATTGTAGCAGATATCATATTGAGATGCCTTAATAAAGATCCATCAGAGAGGCCTACCATGAGGGCCGTTGTGGAGTCCCTAGCAAGCGTCCAGGACATAAAGGTTCCATGTCGATATCCTTTGCAAGAGCCATCTGCTGCCCCAAGAAAGGTGATGTTAAAATCTACAAGTCTCAATGGCATCATTCATCACCATCCTGTCGTAACCTTCTCACCGTCACCTCCTTCGCGAAACCAACATTTGCTCTCGCCAAGGTCATCCACGTCTGCACTGCTTCCTCCAAGGACCAGCTGTGCTCTGGATGGCCCTAGAGTAAGCTCTATCAAGAAATCGCCTTCCCCTATTTTACGGAGATCTGGTGTTGAGGGTTTTTGATTGTCCATATTTTTTTTTCTCTTCTCTTCACTTCGATTTGTTTGTTGTTTTTGCTAGCCTAGTGGTTTTAGTGTAATCTCATATATTGCAAGACAAATGGCCTTATGAACTCCCTTCAGTAGTACTAAGAAGGGAAGGGTGAACTGTAGATAGAACCAGGTTGTAGATACTTTTCGTTTTCTAATTGGATGGAAGCAGCGTGTTGAGTGCGCCTTGTAAACTCCATTATGCAATAATAAACGTGTGTCACTCAGTTCTTTTTTGGGGAGTCAA]

[+] EMBL AK103249             [CCCCTCTTCGCCTCTCCTCGCTGCTGTTATATCCGCTTTCCTCTCCTCCTCCTCCTATCCCCCCTCTCCTCCTGCTCCTCGGCCTCCTCCCCTAGATGCCAGCCGCGGCCTGACCCTCACCGCTGGGGAGCCCCCCTCCCATTCTTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAAGCACGTCCTCAAGACTCCCAGAGCCAGAAGCGCATGTGCCATCGTTACAATCTGCTCCTCCTAGTTTTAGGAACAAGGCTAAAATCCACCAATCGGAAAAGAAAGCTTCTTACAGCAGAGCGCGCGTGCTGTCTGCTCCTTCCAGCCTAATTGTGGTTGATCAGGATGGTCTTCCATATGCCGAATTCGATGATCAAGATGACTCCAGGGGCAAGGGAGGTTCTATAAAGGGCCACC GTTTCTCTAATCCACTGCCCCTTCCTCTCCCATCACCAGAAGGAAAATTATTGAGGAACTTTGGCAGCTTCAAAGCCATCAATGCAAGTGGACCACTCGATGCTTCAGGCCCTCTGCCACTTCCTCCAAAGAAGTGTGATGGGCTTAAGAATTTCTCCTATGAGGAACTTTCATCAGCTTGCCAATGGTTTTCTGGTGACCAGTGTGTTTCCGAAAGTTTGACATCAACATCATACAAGGCGTCCTTTAGGGATGATTTTACCGACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAGAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATGAAAGGATGTTGGTCTATGAGCGACTCCATCATGGCAGCTTAGATAAACTACTCTTTGGAAGATCGGATGGTCGTTTCATGGACTGGTCAGCACGTTTGAAGGTTGCTCTTGGTGCTGCTAGAGGCCTGGCTTTCCTACATGATGAAGGGCCTTTTCAGGCCATGTACAATGACTTCTCAACCTCAAACATCCAAATTGACAAAGATTTCACTGCAAAGCTATCAGGATATGGATGTGTTGGATTCAATACCGAGGAGGAAATATCAAATGCATCTGTGGCTGCTGCAAACCTCTCAGTGGAAACCTTGGAGAAAGGTGTACTGACTCCCAAGAGCAACGTATGGTGCTTTGGAGTTGTCCTGCTGGAGCTAATAACAGGAAGGAAGAACCTTGATGTCCGTTCCTCAAAAGAAGAACGCAATATTGTCAAGTGGAGTAGGCCTTTCCTCACCGATGATAGTCGCCTATCGTTAATCATGGACTCCCGTATAAAAGGACGCTTCCCTACCAAGGCTGCTCGGATTGTAGCAGATATCATATTGAGATGCCTTAATAAAGATCCATCAGAGAGGCCTACCATGAGGGCCGTTGTGGAGTCCCTAGCAAGCGTCCAGGACATAAAGGTTCCATGTCGATATCCTTTGCAAGAGCCATCTGCTGCCCCAAGAAAGGTGATGTTAAAATCTACAAGTCTCAATGGCATCATTCATCACCATCCTGTCGTAACCTTCTCACCGTCACCTCCTTCGCGAAACCAACATTTGCTCTCGCCAAGGTCATCCACGTCTGCACTGCTTCCTCCAAGGACCAGCTGTGCTCTGGATGGCCCTAGAGTAAGCTCTATCAAGAAATCGCCTTCCCCTATTTTACGGAGATCTGGTGTTGAGGGTTTTTGATTGTCCATATTTTTTTTTCTCTTCTCTTCACTTCGATTTGTTTGTTGTTTTTGCTAGCCTAGTGGTTTTAGTGTAATCTCATATATTGCAAGACAAATGGCCTTATGAACTCCCTTCAGTAGTACTAAGAAGGGAAGGGTGAACTGTAGATAGAACCAGGTTGTAGATACTTTTCGTTTTCTAATTGGATGGAAGCAGCGTGTTGAGTGCGCCTTGTAAACTCCATTATGCAATAATAAACGTGTGTCACTCAGTTCTTTTTTGGGGAGTCAA]
[+] EMBL CB680838             [                                                                                                                                                                                                                                                                                                                                                                                                ACCAATCCGTAAAGAAAGCTTCTTACAGCAGAGCGCGCGTGCTGTCTGCTCCTTCCAGCCTAATTGTGGTTGATCAGGATGGTCTTCCATATGCCGAATTCGATGATCAAGATGACTCCAGGGGCAAGGGAGGTTCTATAAAGGGCCACCTGTTTCTCTAATCCACTGCCCCTTCCTCTCCCATCACCAGAAGGAAAATCATTGAGGAACTTTGGCAGCTTCAAAGCCATCAATGCAAGTGGACCACTCGATGCTTCAGGCCCTCTGCCACTTCCTCCAAAGAAGTGTGATGGGCTTAAGAATTTCTCCTATGAGGAACTTTCATCAGCTTGCCAATGGTTTTCTGGTGACCAGTGTGTTTCCGAAAGTTTGACATCAACATCATACAAGGCGTCCTTTAGGGATGATTTTACCGACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCTCCACTCAGAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATCCCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATGAAAGGATGTTGGTCTATGAGCGACTCCATCATGGCAGCTTAGATAAACTACTCTTTGGAAGATCGGATGGTCGTTTCATGGACTGGTCAGCACGTTTGAAGGTTGCTCTTGGTGCTGCTAGAGGCCTGGCTTTCCTACATGATGAAGGGCCTTTTCAGGCCATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB680836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTATGGTGCTTTGGAGTTGTCCTGCTGGAGCTAATAACAGGAAGGAAGAACCTTGATGTCCGTTCCTCAAAAGAAGAACGCAATATTGTCAAGTGGAGTAGGCCTTTCCTCACCGATGATAGTCGCCTATCGTTAATCATGGACTCCCGTATAAAAGGACGCTTCCCTACCAAGGCTGCTCGGATTGTAGCAGATATCATATTGAGATGCCTTAATAAAGATCCATCAGAGAGGCCTACCATGAGGGCCGTTGTGGAGTCCCTAGCAAGCGTCCAGGACATAAAGGTTCCATGTCGATATCCTTTGCAAGAGCCATCTGCTGCCCCAAGAAAGGTGATGTTAAAATCTACAAGTCTCAATGGCATCATTCATCACCATCCTGTCGTAACCTTCTCACCGTCACCTCCTTCGCGAAACCAACATTTGCTCTCGCCAAGGTCATCCACGTCTGCACTGCTTCCTCCAAGGACCAGCTGTGCTCTGGATGACCCTAGAGTAAGCTCTATCAAGAAATCGCCTTCCCCTATTTTACGGAGATCTGGTGTTGAGGGTTTTTGATTGTCCATATTTTTTTTTCTCTTCTCTTCACTTCGATTTGTTTGTTGTTTTTGCTAGCCTAGTGGTTTTAGTGTAATCTCATATATTGCAAGACAAATGGCCTTATGAACTCCCTTCAGTAGTACTAAGAAGGGAAGGGTGAACTGTAGATAGAACCAGGTTGTAGATACTTTTCGTTTTCTAATTGGATGGAAGCAGCGTGTTGAGTGCGCCTTGTAAACTCCATTATGCAATAATA                                   ]


>consensus_4199#0 CCCCTCTTCGCCTCTCCTCGCTGCTGTTATATCCGCTTTCCTCTCCTCCTCCTCCTATCC CCCCTCTCCTCCTGCTCCTCGGCCTCCTCCCCTAGATGCCAGCCGCGGCCTGACCCTCAC CGCTGGGGAGCCCCCCTCCCATTCTTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGT TCCAGCGGCCACAGCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGA GATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAAGCA CGTCCTCAAGACTCCCAGAGCCAGAAGCGCATGTGCCATCGTTACAATCTGCTCCTCCTA GTTTTAGGAACAAGGCTAAAATCCACCAATCGGAAAAGAAAGCTTCTTACAGCAGAGCGC GCGTGCTGTCTGCTCCTTCCAGCCTAATTGTGGTTGATCAGGATGGTCTTCCATATGCCG AATTCGATGATCAAGATGACTCCAGGGGCAAGGGAGGTTCTATAAAGGGCCACCGTTTCT CTAATCCACTGCCCCTTCCTCTCCCATCACCAGAAGGAAAATTATTGAGGAACTTTGGCA GCTTCAAAGCCATCAATGCAAGTGGACCACTCGATGCTTCAGGCCCTCTGCCACTTCCTC CAAAGAAGTGTGATGGGCTTAAGAATTTCTCCTATGAGGAACTTTCATCAGCTTGCCAAT GGTTTTCTGGTGACCAGTGTGTTTCCGAAAGTTTGACATCAACATCATACAAGGCGTCCT TTAGGGATGATTTTACCGACCCAAAGACCATTGAAGCAATAGTATCTCGGTTGCTCTCCT CCACTCAGAGTTTGAAAGAGTTTAAAACACAAGTGAATACCTTGGCATCACTTCAGCATC CCAACTTATGTAAACTAATCGGCTTTCACGCAAGAGAAGAATCTAATGAAAGGATGTTGG TCTATGAGCGACTCCATCATGGCAGCTTAGATAAACTACTCTTTGGAAGATCGGATGGTC GTTTCATGGACTGGTCAGCACGTTTGAAGGTTGCTCTTGGTGCTGCTAGAGGCCTGGCTT TCCTACATGATGAAGGGCCTTTTCAGGCCATGTACAATGACTTCTCAACCTCAAACATCC AAATTGACAAAGATTTCACTGCAAAGCTATCAGGATATGGATGTGTTGGATTCAATACCG AGGAGGAAATATCAAATGCATCTGTGGCTGCTGCAAACCTCTCAGTGGAAACCTTGGAGA AAGGTGTACTGACTCCCAAGAGCAACGTATGGTGCTTTGGAGTTGTCCTGCTGGAGCTAA TAACAGGAAGGAAGAACCTTGATGTCCGTTCCTCAAAAGAAGAACGCAATATTGTCAAGT GGAGTAGGCCTTTCCTCACCGATGATAGTCGCCTATCGTTAATCATGGACTCCCGTATAA AAGGACGCTTCCCTACCAAGGCTGCTCGGATTGTAGCAGATATCATATTGAGATGCCTTA ATAAAGATCCATCAGAGAGGCCTACCATGAGGGCCGTTGTGGAGTCCCTAGCAAGCGTCC AGGACATAAAGGTTCCATGTCGATATCCTTTGCAAGAGCCATCTGCTGCCCCAAGAAAGG TGATGTTAAAATCTACAAGTCTCAATGGCATCATTCATCACCATCCTGTCGTAACCTTCT CACCGTCACCTCCTTCGCGAAACCAACATTTGCTCTCGCCAAGGTCATCCACGTCTGCAC TGCTTCCTCCAAGGACCAGCTGTGCTCTGGATGGCCCTAGAGTAAGCTCTATCAAGAAAT CGCCTTCCCCTATTTTACGGAGATCTGGTGTTGAGGGTTTTTGATTGTCCATATTTTTTT TTCTCTTCTCTTCACTTCGATTTGTTTGTTGTTTTTGCTAGCCTAGTGGTTTTAGTGTAA TCTCATATATTGCAAGACAAATGGCCTTATGAACTCCCTTCAGTAGTACTAAGAAGGGAA GGGTGAACTGTAGATAGAACCAGGTTGTAGATACTTTTCGTTTTCTAATTGGATGGAAGC AGCGTGTTGAGTGCGCCTTGTAAACTCCATTATGCAATAATAAACGTGTGTCACTCAGTT CTTTTTTGGGGAGTCAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)