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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1893 fasta sequence
[GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCCCTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCCCGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCGCGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAAGGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCACGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCGCAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGACGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGAGGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGGCAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGACGCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGCTGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAGCTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCATGCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGAGTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTCAACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGGCACGTAATGAAGCAAGCAGC]
[+] EMBL AK109922 [GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCCCTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCCCGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCGCGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAAGGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCACGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCGCAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGACGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGAGGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGGCAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGACGCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGCTGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAGCTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCATGCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGAGTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTCAACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGGCACGTAATGAAGCAAGCAGC]
consensusID : consensus_4203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1266 fasta sequence
[AAATGCCCTAAAGGCACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACTTTTATGCACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTTCCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAATATTACATTGCAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTC-AAAAACGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACTCACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA]
[+] EMBL CB680955 [AAATGCCCTAAAGGCACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACTTTTATGCACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTTCCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAATATTACATTGCAGGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGTTGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGATGTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCCTAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTC AAAAACGTTTTACATCCCTCACATG ]
[-] EMBL CB680956 [ AGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGAATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATACCTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCAAGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTTCTTTTTACTCGAAAACCGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACTCACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGGCAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGCATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGCTCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAAGCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGCTATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGTCAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTACGATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4203#0 GTGAGCCAGCGACGCCACCGCGCCGCGCGCCATGCCGCTCCTCCTCCACCCGCGCTTCCC 60
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CTCCTCCCACGCCGCGGCCTGCGCCCACCGCGCCGCCGCCGCCCACCGCGACGCGCGGCC 120
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CGCGCTTCGCCTCCCCGAGCTACACGCGACGAGGCGGAGGCGGAACAACGTCGCGTGCCG 180
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CGCGACCAGGGCCAGGGAGGCGCCGCCGCAGCAGCAGAATACGGCGGCGGCGCTGTCCAA 240
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 GGAGGCGCACAAGTACTTCGACCACGCCGTGGTCACCGTCCGCGCGGGCGACGGCGGCCA 300
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CGGCGCCGTCCTCGCCATGCCGGCCCCCCCCTCGACGGACGCCCCCAAATCCCCCCGCCG 360
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CAGGTCGGACAAGGGCAAGAGGAGCGGCGTGAAGAAGGTGTCGTACAAGAGGAACTACGA 420
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CGGGTCGGTGGCGCTGCCGATGGGCGGCCACGGCGGCGATGTGGTGGTGTACGCCGACGA 480
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 GGCGGAGGAGACGCTGCTCCGGTTCCACGAGAAGGCCCGATACTGCGCCAAGAGGGGAGG 540
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CAACGTGGGCGCCACCGGAACCCTGAGCTCGCGGATGCACAATGGCTTCGCCGGGGAGAC 600
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 GCTCAGGATACCCGTGCCTGTAGGTACTGTTGTGAAGCGCAAGAAAGGCGCTGTTCTTGC 660
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 TGATTTGGCTCATCCCGGTGATGAAGTTATTGTTGCTAGGGGTGGACAAGGCGGGATAAG 720
consensus_4203#1 ------------------------------------------------------------
consensus_4203#0 CTTGATCGATGTGCCTGAGTACAGAAGGAGGAAAGCCATGGTTTTATCACCTAATATCAT 780
consensus_4203#1 ----------------------AAATGCCCTAAAGGCACACTTCTATCAGC-AATAACAC 37
* * * **** ** ** ***** * **** **
consensus_4203#0 GCGTGATGTTAGTGACAGGGTGTTAATTCATGGTCAGCCTGGTGAGGAAGTAAGCTTGGA 840
consensus_4203#1 TTGCAAGACCAG----ACATTGCTGATTATCCATTCACTACATTAATGCCAAATCTTGG- 92
* * ** * ** * *** * * * * ** *****
consensus_4203#0 GTTAATCTTAAGGGTGGTTGCAGACGTTGGTCTTGTGGGACTTCCAAATGCTGGAAAGTC 900
consensus_4203#1 --TCGTCTTGGTGGAGATC-CTGCTCTAGGGGCGTTGCAGTTTTCCTCAGAGGCAACATT 149
* **** ** * * * * * ** ** ** * * * ** *
consensus_4203#0 AACACTTCTATCAGCAATAACACTTGCAAGACCAGACATTGCTGATTATCCATTCACTAC 960
consensus_4203#1 GGCAGACTTGCCAG--GTCTCATTGAGGGTGCTCATCTGGGCAAGGTGCTCTTTTACT-- 205
** * *** * ** * * * ** * * ** ***
consensus_4203#0 ATTAATGCCAAATCTTGGTCGTCTTGGTGGAGATCCTGCTCT---AGGGGCGTTGCAGTT 1017
consensus_4203#1 -TTTATGC---ACTTTGCTTATTTCATACAAAATGTTTCTTTGCAATAGCCATGTTGCTT 261
** **** * *** * * * * ** * ** * * * * * **
consensus_4203#0 TTCCTCAGAGGCAACATTGGCAGACTTGCCAGGTCTCATTGAGGGTGCTCATCTGGGCAA 1077
consensus_4203#1 CCCCTCATTATTTTCTTTGGCATCATCACTTGACTTAAT--------ATTACATTGC--A 311
***** * ****** * * * * ** * * * * *
consensus_4203#0 GGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGT 1137
consensus_4203#1 GGGTCTTGGTCGCAATTTCTTGAGACATTTAAGGAGAACTAGAGTAATCGTCCATGTTGT 371
************************************************************
consensus_4203#0 TGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGAT 1197
consensus_4203#1 TGATGCTGCTGCTGATGACCCTGTGGATGATTATAAGATTGTTAGAGAAGAACTCAGGAT 431
************************************************************
consensus_4203#0 GTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCC 1257
consensus_4203#1 GTATAACCCCCAATATCTGGAGAGACCTTACGTTGTGGTTCTGAATAAGATTGATCTTCC 491
************************************************************
consensus_4203#0 TAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGA 1317
consensus_4203#1 TAAGGCCCAAGACAGGCTATCTTCACTGGCTTTTGAGATATCCTCAATAGGCTGTGAAGA 551
************************************************************
consensus_4203#0 ATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATAC 1377
consensus_4203#1 ATGTGATGGTAACAATACAAGCGAAGACAGTTTAAACGGAAATACAGGCGAACATAATAC 611
************************************************************
consensus_4203#0 CTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCA 1437
consensus_4203#1 CTCATCAGAGACTAAAGTTGAAGGTGGTGAAAAGGAACTTCGGGACTATCCAAGACCTCA 671
************************************************************
consensus_4203#0 AGCTGTTGTTGGTGCAAGTGTACTG----------------------------------- 1462
consensus_4203#1 AGCTGTTGTTGGTGCAAGTGTACTGTATGTCTCTTCAGTTGACCAAACTACATGCATGTT 731
*************************
consensus_4203#0 ------------------------------------------------------------
consensus_4203#1 CTTTTTACTCAAAAACGTTTTACATCCCTCACATGATCTTACTATCATTCCCTTTGAACT 791
consensus_4203#0 --------------------AAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGG 1502
consensus_4203#1 CACGGTCGTGGTTCTGCAGGAAGCACATCGGAATCGATGAGATGCTAAAGGAGATTAGGG 851
****************************************
consensus_4203#0 CAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGC 1562
consensus_4203#1 CAGCCCTGAGAAAATGTTTTGATCACAGGTTACCTGAGCCATGAATGGAAGTCAGCCAGC 911
************************************************************
consensus_4203#0 ATACCAGAGGCTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGC 1622
consensus_4203#1 ATACCAGAGGTTAGTACGAAGACCATAGACAAGTTCTCAAGTAGCAGAGACAGATCGAGC 971
********** *************************************************
consensus_4203#0 TCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAA 1682
consensus_4203#1 TCGGCTCTTGCAAGGACAACAGGGTTCCCTTGGTTTGCAGCAATTTCGACGGTTGATGAA 1031
************************************************************
consensus_4203#0 GCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGC 1742
consensus_4203#1 GCATGAAAATGACCATCAGAAAGTGTGATGATATGGGAGTTTATCAGTATGAGAAGATGC 1091
************************************************************
consensus_4203#0 TATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGT 1802
consensus_4203#1 TATTCGTTAAAAAAAATTATTCGTTCAAAAATGTATGAGAAGATGGTACGAAATGCCAGT 1151
************************************************************
consensus_4203#0 CAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTAC 1862
consensus_4203#1 CAGCAGACGCGTGTGAATAGGAAAGGATAGTTCTGTGTGTTGTTAGACCCTTTTGTGTAC 1211
************************************************************
consensus_4203#0 GATCCAATTGGCACGTAATGAAGCAAGCAGC------------------------ 1893
consensus_4203#1 GATCCAATTGAGGGGTAATGAAGCAAGCAGCTTTGATGCAAAAAACATAAAAAGA 1266
********** *****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||