These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1425 fasta sequence [CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCAGAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTTCATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAGGGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGGCCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTCCATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATCACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGCCGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCAGCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACCGGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGCCAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCGGATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGACCAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTGCCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGTGATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCGCTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGGCGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGGCCATGTCTCCCTCTTCGCCGGCCACCAGCCGGTCATGCCGCTCGACGCCCCCCGCGCCGGCAAGAGGCAGCGATCGTCCTCGGCGTCCGTCGCCGGGAACATTGACGACACCACCGGCATTGGCATGGGCGCCGCCTGACGACCTTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAAGATTCAATCCAGTACTGCATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACACACATGTTAATTTGGAAATCGATCAGGGCAGCAATTTCAGGCAGTTTATCAGTTAGTTCTATACATTAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAGCTAGGGGCTTTAGCTTTACAATATAATACTAA] [+] EMBL AK063290 [CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCAGAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTTCATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAGGGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGGCCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTCCATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATCACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGCCGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCAGCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACCGGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGCCAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCGGATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGACCAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTGCCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGTGATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCGCTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGGCGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGGCCATGTCTCCCTCTTCGCCGGCCACCAGCCGGTCATGCCGCTCGACGCCCCCCGCGCCGGCAAGAGGCAGCGATCGTCCTCGGCGTCCGTCGCCGGGAACATTGACGACACCACCGGCATTGGCATGGGCGCCGCCTGACGACCTTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAAGATTCAATCCAGTACTGCATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACACACATGTTAATTTGGAAATCGATCAGGGCAGCAATTTCAGGCAGTTTATCAGTTAGTTCTATACATTAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAGCTAGGGGCTTTAGCTTTACAATATAATACTAA] consensusID : consensus_4215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence [GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAG-AGCGCGGCGGCGCTGGCGAAGCCGCCGCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCGCTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGGCCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGCCCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGACGTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGATGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAATGGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATATATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG] [+] EMBL AK121826 [GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAG AGCGCGGCGGCGCTGGCGAAGCCGCCGCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCGCTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGGCCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGCCCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGACGTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGATGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAATGGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATATATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG] [+] EMBL AU108188 [ CTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAA CTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAGAAGCGCGGCGGCGCTGGCGAAGCCGCCGCCG CCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4215#0 CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCA 60 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 GAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTT 120 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 CATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAG 180 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 GGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGG 240 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 CCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTC 300 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 CATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATC 360 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 ACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGC 420 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 CGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCA 480 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 GCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACC 540 consensus_4215#1 ------------------------------------------------------------ consensus_4215#0 GGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGC 600 consensus_4215#1 ---------------------------GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGC 33 * * * ******* * ** *** * ** ** consensus_4215#0 CAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCG 660 consensus_4215#1 GCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCG 93 * ********* **** * ************************** ******** consensus_4215#0 GATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGAC 720 consensus_4215#1 GATGCACATGCGCGGGCACGGCGACGAGTACAAGAGCGCGGCGGCGCTGGCGAAGCCGCC 153 ************** ********************** ********** * ** *** * consensus_4215#0 CAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTG 780 consensus_4215#1 ---GCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGC--CGGAGAGGAGGTACTCGTG 208 ** ** **** ** ** * * * ** ** *** ***** ********* consensus_4215#0 CCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGT 840 consensus_4215#1 CCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGAT 268 ****** * ** *** * ***** *** ****** * *********** *** ** * consensus_4215#0 GATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCG 900 consensus_4215#1 CCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCG 328 * **** ***************** ***** *** *** * ** *** *** consensus_4215#0 CTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGG 960 consensus_4215#1 CTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGG 388 ******* ***** ********** * ******** ******************** consensus_4215#0 CGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGG 1020 consensus_4215#1 CCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGC 448 * * ************************** ********************* *** consensus_4215#0 CCATGTCTCCCTCTTCGCCGGCCAC-CAGCCGGTCATGCCGCTC----GACGCCCCCCGC 1075 consensus_4215#1 CCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGAC 508 *** *** ******** ****** * *** ** ** *** * **** ** * consensus_4215#0 GCCGG-------------CAAGAGGCAGCGATCG---TCCTCGGCGTCCGTCGCCGGGAA 1119 consensus_4215#1 GTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGG 568 * *** **** * ** ** * * ** * ** ** *** consensus_4215#0 CA---------TTGACGACA------CCACCGGCATTGGCATGGGCGCCGCCTGACGACC 1164 consensus_4215#1 CAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGA 628 ** ****** ** * ***** * ** *** *** * * consensus_4215#0 TTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAA 1224 consensus_4215#1 TGAGTTCTTCTCCGCGG--GAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGAT 686 * * * * * * * * * * * * ** * * ** * ** * consensus_4215#0 GATTCAATC-CAGTACTGC-ATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACAC 1282 consensus_4215#1 GCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAAT 746 * *** ** * * **** * **** ** * * * *** * consensus_4215#0 ----ACATGTTAATTTGGAAATCGATCAGGGC-AGCAATTTCAGGCAGTTTATCAGT-TA 1336 consensus_4215#1 GGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATA 806 *** ** ** ** * ** * ** ** * * * *** * ** consensus_4215#0 GTTCTATACAT---TAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAG 1393 consensus_4215#1 TATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAA--AG 864 * **** ** * * **** * ** ** * * *** *** **** ** consensus_4215#0 CTAGGGGCTTTAGCTTTACAATATAATACTAA----------------------- 1425 consensus_4215#1 TGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG 919 * ** ** * ** * *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||