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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1580 fasta sequence
[AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG]
[+] EMBL AK059444 [AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGCATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGGTTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGCTTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAGTTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATGGTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTCGGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAAACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTAGAAATCCATTTTCATCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGGCATCTGATGATATGAATTAGGG]
[+] EMBL CA767358 [ TCGTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAGCTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAATTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAAAGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAGGAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAAGATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGAAATACAGAACAAGAGATTCCCACATCAAGATTACGAGTACACAGCATCCGGGAGTAATAGATACAGTTCCTTAGGTGATTATCCTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATGAATACAGACCTGATCTTGTAAGATATCCAGATTCAAGATCACGGCAAGAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTANGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTNCAGGTCATCTGCTGAATACTCTACTGNGCGCC ACAAGTAAGGGTTGATCCATTCACAGGGGAACCATACAAGNTT ]
consensusID : consensus_4216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT]
[+] EMBL AA754495 [AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANGAACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTNGCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTTGATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCAGAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCATGTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTTCNTCCATGTTNCTGGAAAACTATNGGTGAAACACNGTAATAAATTCTATCCTTTATGATGGCTCTGATGATATGAATTAGGGAAAACNNACNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4216#0 AGGCTGCAGCACGCGTACTTCGTATTGGTTCCAGAACAGATTTTCTGCTTGGTGGATTGC 60
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 ATCCTTCAATAAATTGGGCTGAGAAGGAGTCTCATGTAGATGAGGACGAAATGGCCAAGG 120
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 TTAAGACAGCTTTCGTTGGAAATTTACCAGCAAATGTTACAGAGGAGTATTTAAGAAAGC 180
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 TTTTTGAACATTGTGGAGAGGTAGTACGGGTTGCAGTCTCAAGGAAAGGACAATATCCAG 240
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 TTGGATTTGTCCACTTTGCCAGTCGTACAGAGCTCGACAATGCAATAAAAGAAATGGATG 300
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 GTGAAACAGTGAGAGGACCTGACCGAGGGGCAACTTTCAGGATCCAGGTCTCAGTTGCTC 360
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 GGCCTGTGGTAGAGAACGATAAAAAGAGAATTCGTGAAGAAGTGAAAACTAGAAGATCAA 420
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 ACGTATCAACAGACAAGCCGGACCATTCTTATGGAAGACGTGGACATGATTCATATGATC 480
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 GTCAAGCAAAAGCTCCAAGGCTATATAATGAGGTGTCTGATACGGACCCCTATGAAGCAG 540
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 CTGTTGTTTCACTACCTTCAGCCGTCAAGGAACTCCTACTTCGTATTCTACGTCTTAGAA 600
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 TTGGCACTCGATATGATATAGACATTCATTGCATAAGGAGTCTTAATGAACTTCCTGAAA 660
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 AGGCTGCAGTTGCTGTCCTTAATCAGTTTTTGATATCAGGTGCAGATAAACACAATAAAG 720
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 GAGACTATTTCGCTTCATTAATTGCTAAGTACCAGGCTGAGACATTTAGCTCAGCACTAA 780
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 GATTGCAGGGTTCTACTTATTTGCCAAGAAATCCTGGAATACAGAACAAGAGATTCCCAC 840
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 ATCAAGATTACGAGTACACAGCATCCGGGAGTAGTAGATACAGTTCCTTAGGTGATTATC 900
consensus_4216#1 ------------------------------------------------------------
consensus_4216#0 CTTCCTCATCTTATGTGGATGATCCCGCATCATCTCAGTCAAGGAATAGAAGGTATGATG 960
consensus_4216#1 ---------------------AAACTGGTCNGNTCCCCCGNGCGAATNTAATGTANNANG 39
* * * * **** ** *** * *
consensus_4216#0 AATACAGACCTGATCTTGTAAGATATCCAG-ATTCAAGATCACGGCAAGAGGAAATAGTC 1019
consensus_4216#1 AACCCNGTCCTGATCTTTTAANATATCCNNCANTCAAGATCACGGCAANAGGAAATAGTC 99
** * * ********* *** ****** * *************** ***********
consensus_4216#0 CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 1079
consensus_4216#1 CGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGG 159
************************************************************
consensus_4216#0 CATCTCGATCTAGGGTACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTA 1139
consensus_4216#1 CATCTCAATCTAGGGTACGTNCAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTN 219
****** ************* **************************************
consensus_4216#0 GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 1199
consensus_4216#1 GCTTTTTCATCTAGGGAAGGAGGATACTTATCTGCTTCAAGGTACAACACAAACATAGTC 279
************************************************************
consensus_4216#0 CCAGAATTCAGCTCCAGGTCATCTGCTGAATACTCTACTGCTCGCCAACAAGTAAGGTTT 1259
consensus_4216#1 CCAGAATTCAGCTCCAGGTCATCTNCTNNNTNCTCTACTGCGCGCCAACAAGTAAGGTTT 339
************************ ** * ********* ******************
consensus_4216#0 GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCATCAGGCCA 1319
consensus_4216#1 GATCCATTCACAGGGGAACCATACAAGTTTGATCCCTACACCGGTGAACCCNTCAGGCCA 399
*************************************************** ********
consensus_4216#0 GAATCGAACCCACGTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 1379
consensus_4216#1 GAATCGAACCCACCTCGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTT 459
************* **********************************************
consensus_4216#0 TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAAGGACCATATACTGCTCTTGCAT 1439
consensus_4216#1 TGGATATGGTAGATTAGATTTACATCCCTGAACCAAAANGACCATATACTGCTCTTGCAT 519
************************************** *********************
consensus_4216#0 GTTGTAAACCTAGTGTATTTGATGT-GCCTCAGCATTGTAATGTTAGAAATCCATTTTCA 1498
consensus_4216#1 GTTGTTAACCNANTGTATTTGANGTTGCCTCCGCATTGTNATGTTNGAAATCCATTT-CN 578
***** **** * ********* ** ***** ******* ***** *********** *
consensus_4216#0 TCCATGTCACTGGAAAACTATGGTTGAAACAACAGTAATAAGTTCTATCATTTATGATGG 1558
consensus_4216#1 TCCATGTTNCTGGAAAACTATNGGTGAAACA-CNGTAATAAATTCTATCCTTTATGATGG 637
******* ************ * ******* * ******* ******* **********
consensus_4216#0 CATCTGATGATATGAATTAGGG----------- 1580
consensus_4216#1 C-TCTGATGATATGAATTAGGGAAAACNNACNT 669
* ********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||