These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1541 fasta sequence [AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG] [+] EMBL AK068939 [AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG] [+] EMBL AK121837 [AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTTCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG] consensusID : consensus_4218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGTCGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGGGCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCAGTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCCGTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGATGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG] [+] EMBL CA758424 [ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGTCGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGGGCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCAGTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCCGTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGATGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4218#0 AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAG 60 consensus_4218#1 -----------------ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAG 43 * ***************************************** consensus_4218#0 AAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCT 120 consensus_4218#1 AAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCT 103 ************ *********************************************** consensus_4218#0 GCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTG 180 consensus_4218#1 GCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTG 163 ************************************************************ consensus_4218#0 GCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGC 240 consensus_4218#1 GCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGC 223 ******************************** ****** ******************** consensus_4218#0 CATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGG------ 294 consensus_4218#1 CATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGT 283 **************** ********** *********************** ** consensus_4218#0 ------GCTCGGGACCGTGGCGCACCTGCTCGTCC------------------------- 323 consensus_4218#1 CGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGG 343 * ****** **************** *** consensus_4218#0 -----AGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACA 378 consensus_4218#1 GCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCA 403 ********************************** ********* * * *** ** consensus_4218#0 GGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCC 438 consensus_4218#1 GTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCC 463 * * ***************** **** * * **** ** ** * * ******** consensus_4218#0 GTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCA 498 consensus_4218#1 GTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGA 523 ************* ******* * *** **** ** * **** * ** ** *** * consensus_4218#0 AGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCA------------CGCTCGCCGGCGC 546 consensus_4218#1 TGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGC 583 ** ******* * * * ******* *** ************* consensus_4218#0 CGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGC 606 consensus_4218#1 GGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG----------------- 626 ** ** * ******* ****************** **** consensus_4218#0 CGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCT 666 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGA 726 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGAT 786 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGC 846 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCT 906 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCT 966 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGC 1026 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGC 1086 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGAT 1146 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 ACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTG 1206 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCC 1266 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 TCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTC 1326 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTC 1386 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 CATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCT 1446 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAAT 1506 consensus_4218#1 ------------------------------------------------------------ consensus_4218#0 GTAAACCGGTGCTATCGATCAGGTGATCAATGTTG 1541 consensus_4218#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||