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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1541 fasta sequence
[AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG]
[+] EMBL AK068939 [AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG]
[+] EMBL AK121837 [AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGGGCTCGGGACCGTGGCGCACCTGCTCGTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACAGGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTTCTGCCGTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCAAGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCACGCTCGCCGGCGCCGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGCCGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCTCTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGAGTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGATCGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGCCGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCTCGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCTGCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAATGTAAACCGGTGCTATCGATCAGGTGATCAATGTTG]
consensusID : consensus_4218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGTCGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGGGCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCAGTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCCGTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGATGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG]
[+] EMBL CA758424 [ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAGAAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCTGCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTGGCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGCCATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGTCGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGGGCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCAGTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCCGTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGATGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4218#0 AGGCCTCTCAGATTCTCACGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAG 60
consensus_4218#1 -----------------ATGAACTCACAGTAGCACTTATCTCTCCACAGGGAGGAAGGAG 43
* *****************************************
consensus_4218#0 AAGCTAGCTAGCCGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCT 120
consensus_4218#1 AAGCTAGCTAGCAGCCATGGTGGCCCTCGCTGACTCAGCAGCGGCTAGGAAGCTCCTCCT 103
************ ***********************************************
consensus_4218#0 GCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTG 180
consensus_4218#1 GCATGGCGCCGCCACCGACGCCGCCGCCGTCGGCATGAGCTTCGGCCTCGACGGCCTGTG 163
************************************************************
consensus_4218#0 GCAGCTCATCGCCGGACTCTTCTCCGGCCTCGTCCACCTCCTCCTCCTCCCGTTCCAGGC 240
consensus_4218#1 GCAGCTCATCGCCGGACTCTTCTCCGGCCTCGCCCACCTTCTCCTCCTCCCGTTCCAGGC 223
******************************** ****** ********************
consensus_4218#0 CATCGCCCACGGCTTCCAGGCCCTGGGCCACGCCATCCAGGCGCTCTTCGCTGG------ 294
consensus_4218#1 CATCGCCCACGGCTTCGAGGCCCTGGGGCACGCCATCCAGGCGCTCTTCGCCGGCATCGT 283
**************** ********** *********************** **
consensus_4218#0 ------GCTCGGGACCGTGGCGCACCTGCTCGTCC------------------------- 323
consensus_4218#1 CGCCGGGTTCGGGAGCGTGGCGCACCTGCTCCTCCTTCCGTTCGAGATGCTGTGGCGCGG 343
* ****** **************** ***
consensus_4218#0 -----AGGCGGCCGTCGCCGGCATTGGCCATGGATTCGACGGCATGTGGCATGCCATACA 378
consensus_4218#1 GCTCCAGGCGGCCGTCGCCGGCATTGGCCATGGATTCGAGGGCATGTGGGAGGGCATCCA 403
********************************** ********* * * *** **
consensus_4218#0 GGGCTTCTTCGCCAGCATCGTCGCCGCGCTCGCCGGCGCGGCCCATGGGCTCGTCCTGCC 438
consensus_4218#1 GTGGTTCTTCGCCAGCATCGTTGCCGGAATAGGGAGCGCCGCGCACCTGTTTGTCCTGCC 463
* * ***************** **** * * **** ** ** * * ********
consensus_4218#0 GTTCGAGGCGTTCTGGCGGTGGCTGCAGACGGCGGCGGGCGGCACCGGCTCTGGTTTCCA 498
consensus_4218#1 GTTCGAGGCGTTCGCGCGGTGGATCCAGGCGGCCGCCGCTGGCATCAGCCACGGCTTCGA 523
************* ******* * *** **** ** * **** * ** ** *** *
consensus_4218#0 AGGATTGTGGCAGAACGTGTTGGCCTTCTTCGCCA------------CGCTCGCCGGCGC 546
consensus_4218#1 TGGCATGTGGCATGGCATACATGGCTTCTTCACCAACGTCGTCGCCGCGCTCGCCGGCGC 583
** ******* * * * ******* *** *************
consensus_4218#0 CGCTCACGACCTCGTCCACCCGTTCGAGGCGTTCTGGAAGTGGCTCAGGACCGCGGCCGC 606
consensus_4218#1 GGCCCATGGGCTCGTCCTGCCGTTCGAGGCGTTCTGGCGGTGG----------------- 626
** ** * ******* ****************** ****
consensus_4218#0 CGACGCCGCCGCCGACATCAGCTTCAGGCTCGACGGCCTGTGGCCCCTCGTCAAGCGCCT 666
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CTACGCCAGCCTCCTCGCCACGCTCGCGAGCGCCGCCCACGGGCTCGTCCCGCTCCTCGA 726
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GTCGCTCTGGCGGGGGCTCCGCGCCGCGGCCGCCGCGGCGCTCCCCTACGTGCTAGTGAT 786
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CGCCGCCGTCCTATGCGTCGTCGCGCTTGTCTGGCTCGCCTGGCCGTTCCTGTTCCCCGC 846
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CGCGGCGGTGATCGGGCTGGCGCTCGTCGGCGTCGCGGGCTGCTGCGCGTTCTTACTGCT 906
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CGCCGCCGCCGTCCTGATCGGGCGGGCGCTCGTCTACGCCGTCTGCTTCGGCGTTGTCCT 966
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGC 1026
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GCGGTGCTGCTACGACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGC 1086
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CGCCGGCATGGACATCTCGCGAGCAGCGTACGAGTCACTCCCGGAGCTCTACGCCCAGAT 1146
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 ACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCGTCGCGTG 1206
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCC 1266
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 TCCAAGCGAACCCTGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTC 1326
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GGACTCACGTTCCATTGGCCAGCATGTCAGCGAAGATGATGACATGTCCGACTCATGTTC 1386
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 CATAGTAGACCCATACCACGGCGAGCACGTCATTCTGACTATACGCCAGAGGATTCACCT 1446
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GCGTATACATGTCGTAAATAATGTCTGTCCCGTGTGTGCGCTAGCTTAACGATGGTTAAT 1506
consensus_4218#1 ------------------------------------------------------------
consensus_4218#0 GTAAACCGGTGCTATCGATCAGGTGATCAATGTTG 1541
consensus_4218#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||