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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1273 fasta sequence
[TCCTCCTCCTCCTCGTCGGCGGTGCTGCGGCGCTGATCTCCACGATGGCGGAGCGGTCTTCTTCTTCGTCGGAGTCGACTGGTAATGATGAGAAAAAAAGTTCAAAACCACAAGGATCATCCAATGATCATCAAGGGTTTCTGCCAGGAGGCTCTCCTGCAAATACTTTTGATTTTGCTTCTTTGCACAGCTTGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGGACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGCCTGCAATAGACCCTTACATTGAAACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTACAATGGCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGGAAAACTTGACTAGTCCAATGCATAATGCAAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAGGTGAATATGGAGATGAATCCATTGTCCATTGGTGATGATGAGGGTCTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGGGCCTTACACTTTGCATGTGGGTATGGGGAGTTGAAGTGTGCCCAAGTACTTCTTGAGGCGGGTGCTGCAGTGGATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGCCGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTTTGTTATTCTCATGGGCGCATGAACAGTTTGGCTCCAGGATCATCATTCTTTAATTTCTTTGGTGCCGCCATTCATATTTCTTTGCAACCCAGTGGCAGTTCATAAGATACGGTGAAGGGGCTGCCACACAACTGCTGTGGTTCACGATGACTTGCGTACCCCAGCTTTGTTTCTCTTGTTTTCATTAGTGCAATCGAGATTGTGTATCCACATTTTTTTTTTCAATATTGCGCATATAT]
[+] EMBL AK108758 [TCCTCCTCCTCCTCGTCGGCGGTGCTGCGGCGCTGATCTCCACGATGGCGGAGCGGTCTTCTTCTTCGTCGGAGTCGACTGGTAATGATGAGAAAAAAAGTTCAAAACCACAAGGATCATCCAATGATCATCAAGGGTTTCTGCCAGGAGGCTCTCCTGCAAATACTTTTGATTTTGCTTCTTTGCACAGCTTGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGGACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGCCTGCAATAGACCCTTACATTGAAACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTACAATGGCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGGAAAACTTGACTAGTCCAATGCATAATGCAAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAGGTGAATATGGAGATGAATCCATTGTCCATTGGTGATGATGAGGGTCTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGGGCCTTACACTTTGCATGTGGGTATGGGGAGTTGAAGTGTGCCCAAGTACTTCTTGAGGCGGGTGCTGCAGTGGATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGCCGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTTTGTTATTCTCATGGGCGCATGAACAGTTTGGCTCCAGGATCATCATTCTTTAATTTCTTTGGTGCCGCCATTCATATTTCTTTGCAACCCAGTGGCAGTTCATAAGATACGGTGAAGGGGCTGCCACACAACTGCTGTGGTTCACGATGACTTGCGTACCCCAGCTTTGTTTCTCTTGTTTTCATTAGTGCAATCGAGATTGTGTATCCACATTTTTTTTTTCAATATTGCGCATATAT]
consensusID : consensus_4223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[TCTGCCAGGAGGCCCTCCTGCAAATACTTTTGATTTTGCTTCTTTGCACAGCTTGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGGACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGCCTGCAATAGACCCTTACATTGAAACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTACAATGGCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGGAAAACTTGACCAGTCCAATGCATAATGCAAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTTAAGGAACTGAGGAAGAAGGTGAATATGAAGATGGATCCATTGTCCATCACACTGCCAGTGTTGGTGATGATGANGTAANGGGGCAGAGTGCTAACTGCTAAGTAGTATTACTATTTAGTCTTGAGCTTGAGAGNTTGCATA]
[+] EMBL CA764136 [TCTGCCAGGAGGCCCTCCTGCAAATACTTTTGATTTTGCTTCTTTGCACAGCTTGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGGACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGCCTGCAATAGACCCTTACATTGAAACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTACAATGGCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGGAAAACTTGACCAGTCCAATGCATAATGCAAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTTAAGGAACTGAGGAAGAAGGTGAATATGAAGATGGATCCATTGTCCATCACACTGCCAGTGTTGGTGATGATGANGTAANGGGGCAGAGTGCTAACTGCTAAGTAGTATTACTATTTAGTCTTGAGCTTGAGAGNTTGCATA]
consensusID : consensus_4223#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[AAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAGGTGAATATGAAGATGAATCCATTGTCCATCACACTGCCAGTGTTGGTGATGATGAGGGTCTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGGGCCTTACACTTTGCATGTGGGTATGGGGAGTTGAAGTGTGCCCAAGTACTTCTTGAGGCGGGTGCTGCAGTGGATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGCCGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTT]
[+] EMBL CA755467 [AAAGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAGGTGAATATGAAGATGAATCCATTGTCCATCACACTGCCAGTGTTGGTGATGATGAGGGTCTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGGGCCTTACACTTTGCATGTGGGTATGGGGAGTTGAAGTGTGCCCAAGTACTTCTTGAGGCGGGTGCTGCAGTGGATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGCCGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTGCTGAAGAACGGAGCCGCTGTCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4223#0 TCCTCCTCCTCCTCGTCGGCGGTGCTGCGGCGCTGATCTCCACGATGGCGGAGCGGTCTT 60
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CTTCTTCGTCGGAGTCGACTGGTAATGATGAGAAAAAAAGTTCAAAACCACAAGGATCAT 120
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CCAATGATCATCAAGGGTTTCTGCCAGGAGGCTCTCCTGCAAATACTTTTGATTTTGCTT 180
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CTTTGCACAGCTTGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAAAGG 240
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 ACCCTGCGTTCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGC 300
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CTGCAATAGACCCTTACATTGAAACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTA 360
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CAATGGCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGG 420
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 AAAACTTGACTAGTCCAATGCATAATGCAAAGATAGAAGAGCGTGTTTCTC------GTA 474
consensus_4223#2 ----------------------------AAAGATAGAAGAGCGTGTTTCTC------GTA 26
consensus_4223#1 -------TCTGCCAGGAGGCCCTCCTGCAAATACTTTTGATTTTGCTTCTTTGCACAGCT 53
*** * ** ** **** *
consensus_4223#0 TGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGC-T 533
consensus_4223#2 TGAAGGAAGATCCAGCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGC-T 85
consensus_4223#1 TGCTCAATGATCCATCTGTAAAGGAGATAGCAGATCAGATTGCAA---AGGACCCTGCGT 110
** * ****** * ** ** ** *** ** * * * ** ***** *
consensus_4223#0 GCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAA--GATCAGCCAGGCAATGG 591
consensus_4223#2 GCACTGATAAAGTACTGGAATGACCCAGAAACATTTCGAAA--GATCAGCCAGGCAATGG 143
consensus_4223#1 TCACCCAGATGGCGGAGCAGGCACTGGAAGGCGAAGGAGAACAGGGCATGCCTGCAATAG 170
*** * * * * * ** * * ** * ** * ***** *
consensus_4223#0 GGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAG 651
consensus_4223#2 GGCCTTTAGGCGGCCCTGATTTTGCTGAACCTTCTGGAACTGAAGGAACTGAGGAAGAAG 203
consensus_4223#1 ACCCTTACATTGA----AACAATGCAAAAGTTCATGGAAAGCCCCCATTTTTTTACAATG 226
**** * * *** ** * ***** * * * * *
consensus_4223#0 GT-GAATATGGAGATGAATCCATTGTCCAT--------------TGGTGATGATGAGGGT 696
consensus_4223#2 GT-GAATATGAAGATGAATCCATTGTCCATCACACTGCCAGTGTTGGTGATGATGAGGGT 262
consensus_4223#1 GCAGAGCGTCTTGGGGATGCTCTTGTGAAGGATCCTGCAATGTCCAGTCTGCTGGAAAAC 286
* ** * * ** * **** * ** **
consensus_4223#0 CTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGG 756
consensus_4223#2 CTGAAGAAGGCTTTAGATGGTGGAGCAGACAAAGACGAAGAAGATTCAGAGGGCAGAAGG 322
consensus_4223#1 TTGACCAGTCCAATGCATAATGCAA-AGATAGAAGAGCGTGTTTCTCGTATGAAGGAAGA 345
*** * * * ** ** * *** * * * ** * * ****
consensus_4223#0 GCCTTACACTTTGCATGTGGGTATGGG-GAGTTGAAGTGTGCCCAAG-TACTTCTTGAGG 814
consensus_4223#2 GCCTTACACTTTGCATGTGGGTATGGG-GAGTTGAAGTGTGCCCAAG-TACTTCTTGAGG 380
consensus_4223#1 TCCA---GCCGTGAAATCAATTATGGATGAGTTAGAGACTGGTGATCCTGCTGCACTGAT 402
** * ** * ***** ***** ** ** * * ** *
consensus_4223#0 CGGGTGCTGCAGTG-----GATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGC 869
consensus_4223#2 CGGGTGCTGCAGTG-----GATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGC 435
consensus_4223#1 AAAGTACTGGAATGACCCAGAAACATTTCGAAAGATCAGCCAGGCAATGGGGCCTTTAG- 461
** *** * ** ** * ** **** ** * * * ** ** *
consensus_4223#0 CGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTG---CTGAAGAACGGAGCCGCTGT 926
consensus_4223#2 CGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTG---CTGAAGAACGGAGCCGCTGT 492
consensus_4223#1 -GCGGCCCTGATTTTGCTGAACCTTCTGGAACTTAAGGAACTGAGGAAGAAGGTGAATAT 520
** * * * ** * **** *** * **** *** * * *
consensus_4223#0 CACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGA 986
consensus_4223#2 CACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGA 552
consensus_4223#1 GAAGAT-GGATCCATTGTCCATCACACTGCCAGTGTTG--GTGATGATGANGTAANGGGG 577
* * * * *** * * ** **** ** * * ** * * * * **
consensus_4223#0 CGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTTTGTTATTCTCAT 1046
consensus_4223#2 CGAGGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTT------------ 600
consensus_4223#1 CAGAGTGCTAA--CTGCTAAGTAGTATTACTATTTAGTCTTGAGCTTGAGAGNTTGCATA 635
* ** ** * **** * * * * ** ** *
consensus_4223#0 GGGCGCATGAACAGTTTGGCTCCAGGATCATCATTCTTTAATTTCTTTGGTGCCGCCATT 1106
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 CATATTTCTTTGCAACCCAGTGGCAGTTCATAAGATACGGTGAAGGGGCTGCCACACAAC 1166
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 TGCTGTGGTTCACGATGACTTGCGTACCCCAGCTTTGTTTCTCTTGTTTTCATTAGTGCA 1226
consensus_4223#2 ------------------------------------------------------------
consensus_4223#1 ------------------------------------------------------------
consensus_4223#0 ATCGAGATTGTGTATCCACATTTTTTTTTTCAATATTGCGCATATAT 1273
consensus_4223#2 -----------------------------------------------
consensus_4223#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||