cluster # 4229

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Oryza sativa
cluster # 4229 cluster # 4229 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4229#0 length = 1733 sequences # 2

consensus_4229#1 length = 339 sequences # 1

consensusID : consensus_4229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1733
fasta sequence

                              [GCCCGGTCACGCCGCCACCGCCGTCGCCACCGCTCCCCGCCGGCCGTTGTCCGTCTCTCTCGCCGCAACCTCGACCACGACCTGGGGCTGGGGCAGGCTCCGCCTCGCCGCCGCCCGGCGACTGCCAGTCAGGCTCGCCTCGAGCCCTTTCCGAGCCCAACCCGTAGCTATAGGCCCTAAAGTGGAGTTAGGTCCAACGCCACATTGCCTCGCCGACGCAAGTAGCCCACCGCACCACTGTCTCGTCGACTCCGCTGCTCTACAACGACCACTCCCCGAACCCGGATTGAGAGCGAGCGAGAGCGCGCGCGCGGGGAGAAGCCGAGGGTGAAGTCGTCGTCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGACGACGATGCAGTGGTACCTGGTGGCCGCGCTCCTCACCGTCCTCACCAGCTCGCAGGGTATCTTGACTACCCTCTCGCAGAGCAATGGCAAATATAAGTACGACTACGCAACCATTCCATTTCTCGCAGAACTCTTCAAGCTGTCTTTCTCAAGCTTCTTTCTTTGGAAGGAATGCCAGTCTTCATCTCCACCAAGGATGACAAAAGAGTGGAGGAGTATACGACTATACCTTGTTCCTTCAGTCATATATCTCATCCACAACAATGTGCAGTTTGCCACCTTGACCTATGTTGATCCATCTACCTATCAGATAATGGGAAACCTTAAAATTGTCACAACTGGAATTCTGTTTAGGCTTGTCCTAAAAAGGAAGTTGTCAAATCTACAATGGATGGCAGTAGTTTTACTGGCTGTTGGAACTACTACAAGTCAGGTTAAAGGATGTGGCGATGCTCCATGTGATTCTCTTTTTTCAGCCCCATTTCAGGGTTACATACTTGGGATACTTTCTGCTTGCCTTTCTGCACTAGCTGGTGTCTACACTGAATATTTGATGAAGAAGAATAATGATAGTCTGTACTGGCAAAATGTACAATTATATACGTTTGGTGTTATATTCAACATGGGATGGCTTATCTATGGTGACTTCAAAGCTGGATTTGAGAGGGGTCCATGGTGGCAGCGTCTTTTTAATGGCTATTCTATCACAACGTGGATGGTTGTGTTCAATTTAGGGTCTACTGGCCTTCTGGTCTCATGGCTGATGAAGTATTCTGACAATATAGTCAAGGTGTACTCAACTTCAATGGCCATGCTTTTAACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTCATAGGCATTGTCATCTG-CATAATTTCCCAGCAGATGTATTTTATG-CCTGTGAACATGCTTGTTGAATTGCCACAAGCATTGCCAGTTACTTCAAAGTAGGTACATGCCAGTGATGCCACTGTTGTTTAACCTGTTGATCAGTGTGTACGGTCTTCTGATTTAAGCAGAAAGGTTAGTTGATTATTTATAGCTCAGCTTTTGTGAGTAATCCCATGGAAATCGGAGGCTGCAATCTCCACAGCATATGTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCTACACTTTGCCAATTTTTTGGCAAAAAGGTGAAAGCATGCCTTGGAAAAGGAAATCCAGAATCCCTATACATTCTTTAGTTAGTGCTTAATGGTTTATTCACCTTGTATCTAAATTTTCTGACATTCAGTGGATGCAAAACTGGTGAGTGATCATGAAATAGTAAATCTTTG]

[+] EMBL AK121890             [GCCCGGTCACGCCGCCACCGCCGTCGCCACCGCTCCCCGCCGGCCGTTGTCCGTCTCTCTCGCCGCAACCTCGACCACGACCTGGGGCTGGGGCAGGCTCCGCCTCGCCGCCGCCCGGCGACTGCCAGTCAGGCTCGCCTCGAGCCCTTTCCGAGCCCAACCCGTAGCTATAGGCCCTAAAGTGGAGTTAGGTCCAACGCCACATTGCCTCGCCGACGCAAGTAGCCCACCGCACCACTGTCTCGTCGACTCCGCTGCTCTACAACGACCACTCCCCGAACCCGGATTGAGAGCGAGCGAGAGCGCGCGCGCGGGGAGAAGCCGAGGGTGAAGTCGTCGTCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGACGACGATGCAGTGGTACCTGGTGGCCGCGCTCCTCACCGTCCTCACCAGCTCGCAGGGTATCTTGACTACCCTCTCGCAGAGCAATGGCAAATATAAGTACGACTACGCAACCATTCCATTTCTCGCAGAACTCTTCAAGCTGTCTTTCTCAAGCTTCTTTCTTTGGAAGGAATGCCAGTCTTCATCTCCACCAAGGATGACAAAAGAGTGGAGGAGTATACGACTATACCTTGTTCCTTCAGTCATATATCTCATCCACAACAATGTGCAGTTTGCCACCTTGACCTATGTTGATCCATCTACCTATCAGATAATGGGAAACCTTAAAATTGTCACAACTGGAATTCTGTTTAGGCTTGTCCTAAAAAGGAAGTTGTCAAATCTACAATGGATGGCAGTAGTTTTACTGGCTGTTGGAACTACTACAAGTCAGGTTAAAGGATGTGGCGATGCTCCATGTGATTCTCTTTTTTCAGCCCCATTTCAGGGTTACATACTTGGGATACTTTCTGCTTGCCTTTCTGCACTAGCTGGTGTCTACACTGAATATTTGATGAAGAAGAATAATGATAGTCTGTACTGGCAAAATGTACAATTATATACGTTTGGTGTTATATTCAACATGGGATGGCTTATCTATGGTGACTTCAAAGCTGGATTTGAGAGGGGTCCATGGTGGCAGCGTCTTTTTAATGGCTATTCTATCACAACGTGGATGGTTGTGTTCAATTTAGGGTCTACTGGCCTTCTGGTCTCATGGCTGATGAAGTATTCTGACAATATAGTCAAGGTGTACTCAACTTCAATGGCCATGCTTTTAACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTCATAGGCATTGTCATCTG CATAATTTCCCAGCAGATGTATTTTATG CCTGTGAACATGCTTGTTGAATTGCCACAAGCATTGCCAGTTACTTCAAAGTAGGTACATGCCAGTGATGCCACTGTTGTTTAACCTGTTGATCAGTGTGTACGGTCTTCTGATTTAAGCAGAAAGGTTAGTTGATTATTTATAGCTCAGCTTTTGTGAGTAATCCCATGGAAATCGGAGGCTGCAATCTCCACAGCATATGTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCTACACTTTGCCAATTTTTTGGCAAAAAGGTGAAAGCATGCCTTGGAAAAGGAAATCCAGAATCCCTATACATTCTTTAGTTAGTGCTTAATGGTTTATTCACCTTGTATCTAAATTTTCTGACATTCAGTGGATGCAAAACTGGTGAGTGATCATGAAATAGTAAATCTTTG]
[+] EMBL CA998368             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGATAGTCTGTACTGGCAAAATGTACAATTATATACGTTTGGTGTTATATTCAACATGGGATGGCTTATCTATGGTGACTTCAAAGCTGGATTTGAGAGGGGTCCATGGTGGCAGCGTCTTTTTAATGGCTATTCTATCACAACGTGGATGGTTGTGTTCAATTTAGGGTCTACTGGCCTTCTGGTCTCATGGCTGATGAAGTATTCTGACAATATAGTCAAGGTGTACTCAACTTCAATGGCCATGCTTTTAACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTCCTAGGCATTGTCATCTGCCATAATTTCCCTGCACATGTATTTTATGCCCTGTGAACATGCTTGTTGAATTGCC                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_4229#0
GCCCGGTCACGCCGCCACCGCCGTCGCCACCGCTCCCCGCCGGCCGTTGTCCGTCTCTCT
CGCCGCAACCTCGACCACGACCTGGGGCTGGGGCAGGCTCCGCCTCGCCGCCGCCCGGCG
ACTGCCAGTCAGGCTCGCCTCGAGCCCTTTCCGAGCCCAACCCGTAGCTATAGGCCCTAA
AGTGGAGTTAGGTCCAACGCCACATTGCCTCGCCGACGCAAGTAGCCCACCGCACCACTG
TCTCGTCGACTCCGCTGCTCTACAACGACCACTCCCCGAACCCGGATTGAGAGCGAGCGA
GAGCGCGCGCGCGGGGAGAAGCCGAGGGTGAAGTCGTCGTCGTCGGCGGCGGCGGCGGCG
GAGGAGGAGGAGGAGGAGACGACGATGCAGTGGTACCTGGTGGCCGCGCTCCTCACCGTC
CTCACCAGCTCGCAGGGTATCTTGACTACCCTCTCGCAGAGCAATGGCAAATATAAGTAC
GACTACGCAACCATTCCATTTCTCGCAGAACTCTTCAAGCTGTCTTTCTCAAGCTTCTTT
CTTTGGAAGGAATGCCAGTCTTCATCTCCACCAAGGATGACAAAAGAGTGGAGGAGTATA
CGACTATACCTTGTTCCTTCAGTCATATATCTCATCCACAACAATGTGCAGTTTGCCACC
TTGACCTATGTTGATCCATCTACCTATCAGATAATGGGAAACCTTAAAATTGTCACAACT
GGAATTCTGTTTAGGCTTGTCCTAAAAAGGAAGTTGTCAAATCTACAATGGATGGCAGTA
GTTTTACTGGCTGTTGGAACTACTACAAGTCAGGTTAAAGGATGTGGCGATGCTCCATGT
GATTCTCTTTTTTCAGCCCCATTTCAGGGTTACATACTTGGGATACTTTCTGCTTGCCTT
TCTGCACTAGCTGGTGTCTACACTGAATATTTGATGAAGAAGAATAATGATAGTCTGTAC
TGGCAAAATGTACAATTATATACGTTTGGTGTTATATTCAACATGGGATGGCTTATCTAT
GGTGACTTCAAAGCTGGATTTGAGAGGGGTCCATGGTGGCAGCGTCTTTTTAATGGCTAT
TCTATCACAACGTGGATGGTTGTGTTCAATTTAGGGTCTACTGGCCTTCTGGTCTCATGG
CTGATGAAGTATTCTGACAATATAGTCAAGGTGTACTCAACTTCAATGGCCATGCTTTTA
ACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTCATAGGC
ATTGTCATCTGCATAATTTCCCAGCAGATGTATTTTATGCCTGTGAACATGCTTGTTGAA
TTGCCACAAGCATTGCCAGTTACTTCAAAGTAGGTACATGCCAGTGATGCCACTGTTGTT
TAACCTGTTGATCAGTGTGTACGGTCTTCTGATTTAAGCAGAAAGGTTAGTTGATTATTT
ATAGCTCAGCTTTTGTGAGTAATCCCATGGAAATCGGAGGCTGCAATCTCCACAGCATAT
GTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTG
CTACACTTTGCCAATTTTTTGGCAAAAAGGTGAAAGCATGCCTTGGAAAAGGAAATCCAG
AATCCCTATACATTCTTTAGTTAGTGCTTAATGGTTTATTCACCTTGTATCTAAATTTTC
TGACATTCAGTGGATGCAAAACTGGTGAGTGATCATGAAATAGTAAATCTTTG

consensusID : consensus_4229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [AGAGGACGAGACAAGGGGTACTTCAAAGTAGGTACATGCCAGTGATGCTACTGTTGTTTAACCTGTTGATCAGTGTGTACGGTCTTTTGATTTAAGCAGAAAGGTTAGTTGATTATTTATAGCTCAGCTTTTGTGAGTAATCCCATGGATATCGGAGGCTGCAATCTCCACAGGATATGTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCTACACTTTGCCAATTTTTTGGCAAAGAGGTGAAAGCATGCCTTGGAAAAGGAGATCCAGAATCCCTATACATTCTTTAGTTAGTGCTTAAAAAAAAAAAA]

[-] EMBL CA760708             [AGAGGACGAGACAAGGGGTACTTCAAAGTAGGTACATGCCAGTGATGCTACTGTTGTTTAACCTGTTGATCAGTGTGTACGGTCTTTTGATTTAAGCAGAAAGGTTAGTTGATTATTTATAGCTCAGCTTTTGTGAGTAATCCCATGGATATCGGAGGCTGCAATCTCCACAGGATATGTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCTACACTTTGCCAATTTTTTGGCAAAGAGGTGAAAGCATGCCTTGGAAAAGGAGATCCAGAATCCCTATACATTCTTTAGTTAGTGCTTAAAAAAAAAAAA]




>consensus_4229#1
AGAGGACGAGACAAGGGGTACTTCAAAGTAGGTACATGCCAGTGATGCTACTGTTGTTTA
ACCTGTTGATCAGTGTGTACGGTCTTTTGATTTAAGCAGAAAGGTTAGTTGATTATTTAT
AGCTCAGCTTTTGTGAGTAATCCCATGGATATCGGAGGCTGCAATCTCCACAGGATATGT
GTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTGCT
ACACTTTGCCAATTTTTTGGCAAAGAGGTGAAAGCATGCCTTGGAAAAGGAGATCCAGAA
TCCCTATACATTCTTTAGTTAGTGCTTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4229#0      GCCCGGTCACGCCGCCACCGCCGTCGCCACCGCTCCCCGCCGGCCGTTGTCCGTCTCTCT 60
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      CGCCGCAACCTCGACCACGACCTGGGGCTGGGGCAGGCTCCGCCTCGCCGCCGCCCGGCG 120
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      ACTGCCAGTCAGGCTCGCCTCGAGCCCTTTCCGAGCCCAACCCGTAGCTATAGGCCCTAA 180
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      AGTGGAGTTAGGTCCAACGCCACATTGCCTCGCCGACGCAAGTAGCCCACCGCACCACTG 240
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TCTCGTCGACTCCGCTGCTCTACAACGACCACTCCCCGAACCCGGATTGAGAGCGAGCGA 300
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GAGCGCGCGCGCGGGGAGAAGCCGAGGGTGAAGTCGTCGTCGTCGGCGGCGGCGGCGGCG 360
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GAGGAGGAGGAGGAGGAGACGACGATGCAGTGGTACCTGGTGGCCGCGCTCCTCACCGTC 420
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      CTCACCAGCTCGCAGGGTATCTTGACTACCCTCTCGCAGAGCAATGGCAAATATAAGTAC 480
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GACTACGCAACCATTCCATTTCTCGCAGAACTCTTCAAGCTGTCTTTCTCAAGCTTCTTT 540
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      CTTTGGAAGGAATGCCAGTCTTCATCTCCACCAAGGATGACAAAAGAGTGGAGGAGTATA 600
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      CGACTATACCTTGTTCCTTCAGTCATATATCTCATCCACAACAATGTGCAGTTTGCCACC 660
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TTGACCTATGTTGATCCATCTACCTATCAGATAATGGGAAACCTTAAAATTGTCACAACT 720
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GGAATTCTGTTTAGGCTTGTCCTAAAAAGGAAGTTGTCAAATCTACAATGGATGGCAGTA 780
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GTTTTACTGGCTGTTGGAACTACTACAAGTCAGGTTAAAGGATGTGGCGATGCTCCATGT 840
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GATTCTCTTTTTTCAGCCCCATTTCAGGGTTACATACTTGGGATACTTTCTGCTTGCCTT 900
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TCTGCACTAGCTGGTGTCTACACTGAATATTTGATGAAGAAGAATAATGATAGTCTGTAC 960
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TGGCAAAATGTACAATTATATACGTTTGGTGTTATATTCAACATGGGATGGCTTATCTAT 1020
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      GGTGACTTCAAAGCTGGATTTGAGAGGGGTCCATGGTGGCAGCGTCTTTTTAATGGCTAT 1080
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TCTATCACAACGTGGATGGTTGTGTTCAATTTAGGGTCTACTGGCCTTCTGGTCTCATGG 1140
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      CTGATGAAGTATTCTGACAATATAGTCAAGGTGTACTCAACTTCAATGGCCATGCTTTTA 1200
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      ACAATGGTATTGTCTGTATATCTTTTCAATGTGAGAGCAACACTTCAGCTTTTCATAGGC 1260
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      ATTGTCATCTGCATAATTTCCCAGCAGATGTATTTTATGCCTGTGAACATGCTTGTTGAA 1320
consensus_4229#1      ------------------------------------------------------------
                                                                                  

consensus_4229#0      TTGCCACAAGCATTGCCAGTTACTTCAAAGTAGGTACATGCCAGTGATGCCACTGTTGTT 1380
consensus_4229#1      --AGAGGACGAGACAAGGGGTACTTCAAAGTAGGTACATGCCAGTGATGCTACTGTTGTT 58
                             * *        * ****************************** *********

consensus_4229#0      TAACCTGTTGATCAGTGTGTACGGTCTTCTGATTTAAGCAGAAAGGTTAGTTGATTATTT 1440
consensus_4229#1      TAACCTGTTGATCAGTGTGTACGGTCTTTTGATTTAAGCAGAAAGGTTAGTTGATTATTT 118
                      **************************** *******************************

consensus_4229#0      ATAGCTCAGCTTTTGTGAGTAATCCCATGGAAATCGGAGGCTGCAATCTCCACAGCATAT 1500
consensus_4229#1      ATAGCTCAGCTTTTGTGAGTAATCCCATGGATATCGGAGGCTGCAATCTCCACAGGATAT 178
                      ******************************* *********************** ****

consensus_4229#0      GTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTG 1560
consensus_4229#1      GTGTACAGTGTCATGTTTCAGATAACGTGAAAGAAGAGTGGAGCAAACATGGGTTTACTG 238
                      ************************************************************

consensus_4229#0      CTACACTTTGCCAATTTTTTGGCAAAAAGGTGAAAGCATGCCTTGGAAAAGGAAATCCAG 1620
consensus_4229#1      CTACACTTTGCCAATTTTTTGGCAAAGAGGTGAAAGCATGCCTTGGAAAAGGAGATCCAG 298
                      ************************** ************************** ******

consensus_4229#0      AATCCCTATACATTCTTTAGTTAGTGCTTAATGGTTTATTCACCTTGTATCTAAATTTTC 1680
consensus_4229#1      AATCCCTATACATTCTTTAGTTAGTGCTTAAAAAAAAAAAA------------------- 339
                      *******************************      *                      

consensus_4229#0      TGACATTCAGTGGATGCAAAACTGGTGAGTGATCATGAAATAGTAAATCTTTG 1733
consensus_4229#1      -----------------------------------------------------