Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4248 cluster # 4248       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4248#0 length = 3614 sequences # 2  
 consensus_4248#1 length = 1073 sequences # 1  
consensusID : consensus_4248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3614
fasta sequence 
                              [AATACGACAAGGGCACAACCACAAATTCAATAACACAATTGTTGATAATTGTTGGATTACTTTGTGAGTAAAAACCACTCACTTCCCTAATCCCCTGATCGTTCCATCCATTGAAGTAGGAAAAAAAAAGAAACAAAAACTAATACAGTAGCTTAATAAGGAAGGTCTAGCAGCCAATTAGTCCACTTAATCACCCATGGATCGCGATATGTTGTCTTTGTTTGCTCCTTCCTTGCGACCTGGTTGATCTGCACTTATGCTATACGCTGCTTCTCTCCCGAAACCATGCGGCTGCTGCTGGTTCTGCCGAGATGGAGCTGGGGCTCAAGCCCCAACGAGCCCCAACGAGCCCCAACGGTGAATCCGCCCCTGCTAGTCGTAGCTAGCTAGCGAGTGAATCAGTGGAGTGACGAGAGATCTCGCGATGGCGAAGGCGGTGGTGCTGCCGCTGGTTAGCAAGCTTCAGGAGGTGGCCCTGAGCGAGGGGAGGGCGCTGGTTGGCGTCGGCGGCGAGATCAACCGCCTCCGCGACAAGCTCATGTGGCTGATGGCCTTCCTCCAGGAGGCGGACCCCCAGAGGCGGGCGGCCGACGCCGGCGGCGAGCTCATGCGCGTGCTCGTGCACCAGAACCGCGACGCCGCGTTCAGCGCCGAGGACGCCCTCGACGACTACGCCGTCCGCGTCGACCTGTCCCGCTACCCCGGCTGGTCGCGCGCCGCCGTCGGCTTCCTCGCCGGCATCACCACCCAGCTGCGCGTCCGCCACAGGCTCTCCAGCGACATCGCGGCCATCCATGCCCGCTTTGAGGAGATCGTCGGCAACAAGGACAAGTACAGGCTGGAGGGCTCTGCGCCCTCGTCGTTGCTGACGTGGACTGCCTCCGCCGCCTCCTCGAGTGAATCAATCCTCTGGGGTACATCCAAGCCACCAATTATCGGGCGTGACGACCAGCAGCAGGAACTAGAGGCAATGCTTCTCAGCTCCGCAGGATGCCTCGCCGTAATATATGTCGTCGGCGATAGTGGTGTTGGTAAGACGATCCTTGTAAACAGTGTCTGTTCAAAACCATCTGTCAGAGAACACTTCAAAGAGCGAATTGGAGTGAAGGTCGGAAAAGATGCTGGTATATCCAACATCCTGAGTTTGATAAGCAAAGAACTGAAGAAAGAAAATAACGAAAGTGACAATGAGAATCCTAGAAGCAAGATACAAAGACGTCTTGGTGAAGAGTGCTACTTGATCATCATCGATGGCAGGCAGATGTCCATCGCTGACTGGAATGCTGTGATCCATGCTCTTCCGAAGAACGAAAGAGGTAGTCGGGTAGTGCTCATCACGAAAATAAAACCACAGTTTCTAGACCACCCAATGAATGATGTCCATGAGATAAAGCTGACATGCCTCAATCAAACGGACTGCAGGAAGCTGTTCCACATGAGGCTCCATGGCAAAGAGGAGGATGAACAAAACCAAACCTACCTGCCAATATACTACCAGCGTGTGTATGACATTACCGGGGGCTCGCCATTGGCAGTTATCCTGCTTGCTGGACTCATGCACAACAAGGAGTATCCACATGAATGGGATAGGGTGTTAAAATACCTCGAGTCAGCCAAAGAGAAGCGGCTCAACAGGATACTGTCCCTGAGCTTCGATGACCTGCACCATGAGCTCAAGCTCTGCTTCCTCTACTTCACAGCATTCCCGGTCAGCTACAAGGTGTACCAGAACGTGCTTGTCAACTTGTGGGTATCAGAGGGCTTTGTGGTGCCGCGGCACGGGAAGACGGTACAGCAACTGGGACAGCTATACCTGAGGCAGCTTACCACTAGGGGACTAGTTACTGAAGCATCAGCTGATGGTGACTACGACATCCGCCACTTTTTCCTCCATGACAGTGTCTACTTGTTTGCACGGTCAGAGGCACATGAGGCAAACTTCATGGAGCTGCATGATGGTGACTACTTCCCATCGCCGGACAGGGCTCGACGCCTCACACTACATAACAGTATGGACAGATACGCGGCACTAGATAACAAGATGCCCAAGCTACGGTCCATCTTTGCAATCTTCGAAGAGATACCAGCCAGCACAGCAGAAGAAAGTGTATCATCTCCTAGCTGCTTCCCCACCTGCTGTTCATGCGAGCAGCACAGATCACCGAAAATTTCAAGATTTGACCTCACCAAGCTGCTGAAAAGATCCAAGTTCCTACGAGTAATCATGATCGAAGGCCTGAATATCGGCACCGAGTTGCCTGAGGCAATCGGAGGCATGGTGCATCTCCGTTACCTTAGCACGCGTTGCCGATCTCTGAGGAGGATCCGCCCGTCGATTGGGAATCTCAAAAATCTTCAAACAATTGATGTCAGACAAAGCTTAGTGCATGAACTGCCGTGTTCCTTTTGGAAGATCACATCGCTAAGGCATGTGTTTGGCTCTGAGCTGATCGTGCCAAGATGGACTCGTGAACTGAAACAGCTAAATACACTCAAGTCGGTGAGAGCATTGCAGGATTGGGATGGCTCTATGTTGAGAAGAATGGTTAACCTCAAGTTACTGGATGTGACTATCCAAGAGAAGCTCAAAGAGGAGAAGGCGCGCAAGTTATCAGACAACCTTAACAATCTCAACAACCTTACTACACTGATCTTGAAAGGAGTTGACCTCCCAATCTCTAGCATTTTTACGGCACCTTCCCTGCAATTCCTCAAGACTATAGAACTAACCGGAACCATCCTGCTCACAACTCCATCACCAGAAATAGACAAGATGACCACTTCACCTTCTGATTTCCAGCTGCCGAACTTGAGCAAATTGTCATTGTCAAAGACGTGTCTGCAACAAGGGTTCATTGGAAAGCTAGGCAAGCTGCCCCTTCTTTCCAATCTCACACTCAAGGATGTTTCTTGTGACGGAGAAGAGCTTGTTTTCAGGCCTGATGGGTTTCATTGCTTGAAAAAATTGGAAGTAAACGACACGTCCAAACGTGTTGTGATAGAGGAGCATGCTTTGCCTGTATTGGTCTCTTTGCATATCATTGGGAACAGTAGAAATTACCAACACTCGATCCATCCTACTCACAAGATTATCAACAAGATTAGACATGAGGACATAAATCTTTTTCAGCGTATCTGCACTTGTCATCAGAAAGAGATAACCAAAGGCTAACAAGCATATATCCTTGTAAGTTTGTCAAATTATATCGCTTTAGCTCTGTATTTTTCCATCATATGTTGTTTACATGCATGTAACAATTGGATATCCTTCTTTTTGCTAATTTCCAGTGTTAGGAAGAGTCCTTCGAAGTGAAAGTTGTACGATGTCATCGACGAAGAGTCAGTTTCCTCTTCAAAATGTCATCGACAATCATAAACCAATTCTGCAATATGACATTGCGAAAGTGATTTCCTTCTGTTTGCAATTTTTACACAATGCGCAAATTACCTGTAAGTAGACTTGTACTTCGTTTTCTTGTTTTCGTTTTTCTCAGGAGTCGGGTGTTGACGTGTTGTAGTTCGTCATTAATTTCGTTTCCTTGTGCGCGGAAATGCGACCCGCCTCCTGGATCATTCTGTACTATTGCAACTTACACAACCACTGAATAAACTCG]

[-] EMBL AK108463             [AATACGACAAGGGCACAACCACAAATTCAATAACACAATTGTTGATAATTGTTGGATTACTTTGTGAGTAAAAACCACTCACTTCCCTAATCCCCTGATCGTTCCATCCATTGAAGTAGGAAAAAAAAAGAAACAAAAACTAATACAGTAGCTTAATAAGGAAGGTCTAGCAGCCAATTAGTCCACTTAATCACCCATGGATCGCGATATGTTGTCTTTGTTTGCTCCTTCCTTGCGACCTGGTTGATCTGCACTTATGCTATACGCTGCTTCTCTCCCGAAACCATGCGGCTGCTGCTGGTTCTGCCGAGATGGAGCTGGGGCTCAAGCCCCAACGAGCCCCAACGAGCCCCAACGGTGAATCCGCCCCTGCTAGTCGTAGCTAGCTAGCGAGTGAATCAGTGGAGTGACGAGAGATCTCGCGATGGCGAAGGCGGTGGTGCTGCCGCTGGTTAGCAAGCTTCAGGAGGTGGCCCTGAGCGAGGGGAGGGCGCTGGTTGGCGTCGGCGGCGAGATCAACCGCCTCCGCGACAAGCTCATGTGGCTGATGGCCTTCCTCCAGGAGGCGGACCCCCAGAGGCGGGCGGCCGACGCCGGCGGCGAGCTCATGCGCGTGCTCGTGCACCAGAACCGCGACGCCGCGTTCAGCGCCGAGGACGCCCTCGACGACTACGCCGTCCGCGTCGACCTGTCCCGCTACCCCGGCTGGTCGCGCGCCGCCGTCGGCTTCCTCGCCGGCATCACCACCCAGCTGCGCGTCCGCCACAGGCTCTCCAGCGACATCGCGGCCATCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK073881             [                                                                                                                                                                                                                                                       TCTGCACTTATGCTATACGCTGCTTCTCTCCCGAAACCATGCGGCTGCTGCTGGTTCTGCCGAGATGGAGCTGGGGCTCAAGCCCCAACGAGCCCCAACGAGCCCCAACGGTGAATCCGCCCCTGCTAGTCGTAGCTAGCTAGCGAGTGAATCAGTGGAGTGACGAGAGATCTCGCGATGGCGAAGGCGGTGGTGCTGCCGCTGGTTAGCAAGCTTCAGGAGGTGGCCCTGAGCGAGGGGAGGGCGCTGGTTGGCGTCGGCGGCGAGATCAACCGCCTCCGCGACAAGCTCATGTGGCTGATGGCCTTCCTCCAGGAGGCGGACCCCCAGAGGCGGGCGGCCGACGCCGGCGGCGAGCTCATGCGCGTGCTCGTGCACCAGACCCGCGACGCCGCGTTCAGCGCCGAGGACGCCCTCGACGACTACGCCGTCCGCGTCGACCTGTCCCGCTACCCCGGCTGGTCGCGCGCCGCCGTCGGCTTCCTCGCCGGCATCACCACCCAGCTGCGCGTCCGCCACAGGCTCTCCAGCGACATCGCGGCCATCCATGCCCGCTTTGAGGAGATCGTCGGCAACAAGGACAAGTACAGGCTGGAGGGCTCTGCGCCCTCGTCGTTGCTGACGTGGACTGCCTCCGCCGCCTCCTCGAGTGAATCAATCCTCTGGGGTACATCCAAGCCACCAATTATCGGGCGTGACGACCAGCAGCAGGAACTAGAGGCAATGCTTCTCAGCTCCGCAGGATGCCTCGCCGTAATATATGTCGTCGGCGATAGTGGTGTTGGTAAGACGATCCTTGTAAACAGTGTCTGTTCAAAACCATCTGTCAGAGAACACTTCAAAGAGCGAATTGGAGTGAAGGTCGGAAAAGATGCTGGTATATCCAACATCCTGAGTTTGATAAGCAAAGAACTGAAGAAAGAAAATAACGAAAGTGACAATGAGAATCCTAGAAGCAAGATACAAAGACGTCTTGGTGAAGAGTGCTACTTGATCATCATCGATGGCAGGCAGATGTCCATCGCTGACTGGAATGCTGTGATCCATGCTCTTCCGAAGAACGAAAGAGGTAGTCGGGTAGTGCTCATCACGAAAATAAAACCACAGTTTCTAGACCACCCAATGAATGATGTCCATGAGATAAAGCTGACATGCCTCAATCAAACGGACTGCAGGAAGCTGTTCCACATGAGGCTCCATGGCAAAGAGGAGGATGAACAAAACCAAACCTACCTGCCAATATACTACCAGCGTGTGTATGACATTACCGGGGGCTCGCCATTGGCAGTTATCCTGCTTGCTGGACTCATGCACAACAAGGAGTATCCACATGAATGGGATAGGGTGTTAAAATACCTCGAGTCAGCCAAAGAGAAGCGGCTCAACAGGATACTGTCCCTGAGCTTCGATGACCTGCACCATGAGCTCAAGCTCTGCTTCCTCTACTTCACAGCATTCCCGGTCAGCTACAAGGTGTACCAGAACGTGCTTGTCAACTTGTGGGTATCAGAGGGCTTTGTGGTGCCGCGGCACGGGAAGACGGTACAGCAACTGGGACAGCTATACCTGAGGCAGCTTACCACTAGGGGACTAGTTACTGAAGCATCAGCTGATGGTGACTACGACATCCGCCACTTTTTCCTCCATGACAGTGTCTACTTGTTTGCACGGTCAGAGGCACATGAGGCAAACTTCATGGAGCTGCATGATGGTGACTACTTCCCATCGCCGGACAGGGCTCGACGCCTCACACTACATAACAGTATGGACAGATACGCGGCACTAGATAACAAGATGCCCAAGCTACGGTCCATCTTTGCAATCTTCGAAGAGATACCAGCCAGCACAGCAGAAGAAAGTGTATCATCTCCTAGCTGCTTCCCCACCTGCTGTTCATGCGAGCAGCACAGATCACCGAAAATTTCAAGATTTGACCTCACCAAGCTGCTGAAAAGATCCAAGTTCCTACGAGTAATCATGATCGAAGGCCTGAATATCGGCACCGAGTTGCCTGAGGCAATCGGAGGCATGGTGCATCTCCGTTACCTTAGCACGCGTTGCCGATCTCTGAGGAGGATCCGCCCGTCGATTGGGAATCTCAAAAATCTTCAAACAATTGATGTCAGACAAAGCTTAGTGCATGAACTGCCGTGTTCCTTTTGGAAGATCACATCGCTAAGGCATGTGTTTGGCTCTGAGCTGATCGTGCCAAGATGGACTCGTGAACTGAAACAGCTAAATACACTCAAGTCGGTGAGAGCATTGCAGGATTGGGATGGCTCTATGTTGAGAAGAATGGTTAACCTCAAGTTACTGGATGTGACTATCCAAGAGAAGCTCAAAGAGGAGAAGGCGCGCAAGTTATCAGACAACCTTAACAATCTCAACAACCTTACTACACTGATCTTGAAAGGAGTTGACCTCCCAATCTCTAGCATTTTTACGGCACCTTCCCTGCAATTCCTCAAGACTATAGAACTAACCGGAACCATCCTGCTCACAACTCCATCACCAGAAATAGACAAGATGACCACTTCACCTTCTGATTTCCAGCTGCCGAACTTGAGCAAATTGTCATTGTCAAAGACGTGTCTGCAACAAGGGTTCATTGGAAAGCTAGGCAAGCTGCCCCTTCTTTCCAATCTCACACTCAAGGATGTTTCTTGTGACGGAGAAGAGCTTGTTTTCAGGCCTGATGGGTTTCATTGCTTGAAAAAATTGGAAGTAAACGACACGTCCAAACGTGTTGTGATAGAGGAGCATGCTTTGCCTGTATTGGTCTCTTTGCATATCATTGGGAACAGTAGAAATTACCAACACTCGATCCATCCTACTCACAAGATTATCAACAAGATTAGACATGAGGACATAAATCTTTTTCAGCGTATCTGCACTTGTCATCAGAAAGAGATAACCAAAGGCTAACAAGCATATATCCTTGTAAGTTTGTCAAATTATATCGCTTTAGCTCTGTATTTTTCCATCATATGTTGTTTACATGCATGTAACAATTGGATATCCTTCTTTTTGCTAATTTCCAGTGTTAGGAAGAGTCCTTCGAAGTGAAAGTTGTACGATGTCATCGACGAAGAGTCAGTTTCCTCTTCAAAATGTCATCGACAATCATAAACCAATTCTGCAATATGACATTGCGAAAGTGATTTCCTTCTGTTTGCAATTTTTACACAATGCGCAAATTACCTGTAAGTAGACTTGTACTTCGTTTTCTTGTTTTCGTTTTTCTCAGGAGTCGGGTGTTGACGTGTTGTAGTTCGTCATTAATTTCGTTTCCTTGTGCGCGGAAATGCGACCCGCCTCCTGGATCATTCTGTACTATTGCAACTTACACAACCACTGAATAAACTCG]




>consensus_4248#0
AATACGACAAGGGCACAACCACAAATTCAATAACACAATTGTTGATAATTGTTGGATTAC
TTTGTGAGTAAAAACCACTCACTTCCCTAATCCCCTGATCGTTCCATCCATTGAAGTAGG
AAAAAAAAAGAAACAAAAACTAATACAGTAGCTTAATAAGGAAGGTCTAGCAGCCAATTA
GTCCACTTAATCACCCATGGATCGCGATATGTTGTCTTTGTTTGCTCCTTCCTTGCGACC
TGGTTGATCTGCACTTATGCTATACGCTGCTTCTCTCCCGAAACCATGCGGCTGCTGCTG
GTTCTGCCGAGATGGAGCTGGGGCTCAAGCCCCAACGAGCCCCAACGAGCCCCAACGGTG
AATCCGCCCCTGCTAGTCGTAGCTAGCTAGCGAGTGAATCAGTGGAGTGACGAGAGATCT
CGCGATGGCGAAGGCGGTGGTGCTGCCGCTGGTTAGCAAGCTTCAGGAGGTGGCCCTGAG
CGAGGGGAGGGCGCTGGTTGGCGTCGGCGGCGAGATCAACCGCCTCCGCGACAAGCTCAT
GTGGCTGATGGCCTTCCTCCAGGAGGCGGACCCCCAGAGGCGGGCGGCCGACGCCGGCGG
CGAGCTCATGCGCGTGCTCGTGCACCAGAACCGCGACGCCGCGTTCAGCGCCGAGGACGC
CCTCGACGACTACGCCGTCCGCGTCGACCTGTCCCGCTACCCCGGCTGGTCGCGCGCCGC
CGTCGGCTTCCTCGCCGGCATCACCACCCAGCTGCGCGTCCGCCACAGGCTCTCCAGCGA
CATCGCGGCCATCCATGCCCGCTTTGAGGAGATCGTCGGCAACAAGGACAAGTACAGGCT
GGAGGGCTCTGCGCCCTCGTCGTTGCTGACGTGGACTGCCTCCGCCGCCTCCTCGAGTGA
ATCAATCCTCTGGGGTACATCCAAGCCACCAATTATCGGGCGTGACGACCAGCAGCAGGA
ACTAGAGGCAATGCTTCTCAGCTCCGCAGGATGCCTCGCCGTAATATATGTCGTCGGCGA
TAGTGGTGTTGGTAAGACGATCCTTGTAAACAGTGTCTGTTCAAAACCATCTGTCAGAGA
ACACTTCAAAGAGCGAATTGGAGTGAAGGTCGGAAAAGATGCTGGTATATCCAACATCCT
GAGTTTGATAAGCAAAGAACTGAAGAAAGAAAATAACGAAAGTGACAATGAGAATCCTAG
AAGCAAGATACAAAGACGTCTTGGTGAAGAGTGCTACTTGATCATCATCGATGGCAGGCA
GATGTCCATCGCTGACTGGAATGCTGTGATCCATGCTCTTCCGAAGAACGAAAGAGGTAG
TCGGGTAGTGCTCATCACGAAAATAAAACCACAGTTTCTAGACCACCCAATGAATGATGT
CCATGAGATAAAGCTGACATGCCTCAATCAAACGGACTGCAGGAAGCTGTTCCACATGAG
GCTCCATGGCAAAGAGGAGGATGAACAAAACCAAACCTACCTGCCAATATACTACCAGCG
TGTGTATGACATTACCGGGGGCTCGCCATTGGCAGTTATCCTGCTTGCTGGACTCATGCA
CAACAAGGAGTATCCACATGAATGGGATAGGGTGTTAAAATACCTCGAGTCAGCCAAAGA
GAAGCGGCTCAACAGGATACTGTCCCTGAGCTTCGATGACCTGCACCATGAGCTCAAGCT
CTGCTTCCTCTACTTCACAGCATTCCCGGTCAGCTACAAGGTGTACCAGAACGTGCTTGT
CAACTTGTGGGTATCAGAGGGCTTTGTGGTGCCGCGGCACGGGAAGACGGTACAGCAACT
GGGACAGCTATACCTGAGGCAGCTTACCACTAGGGGACTAGTTACTGAAGCATCAGCTGA
TGGTGACTACGACATCCGCCACTTTTTCCTCCATGACAGTGTCTACTTGTTTGCACGGTC
AGAGGCACATGAGGCAAACTTCATGGAGCTGCATGATGGTGACTACTTCCCATCGCCGGA
CAGGGCTCGACGCCTCACACTACATAACAGTATGGACAGATACGCGGCACTAGATAACAA
GATGCCCAAGCTACGGTCCATCTTTGCAATCTTCGAAGAGATACCAGCCAGCACAGCAGA
AGAAAGTGTATCATCTCCTAGCTGCTTCCCCACCTGCTGTTCATGCGAGCAGCACAGATC
ACCGAAAATTTCAAGATTTGACCTCACCAAGCTGCTGAAAAGATCCAAGTTCCTACGAGT
AATCATGATCGAAGGCCTGAATATCGGCACCGAGTTGCCTGAGGCAATCGGAGGCATGGT
GCATCTCCGTTACCTTAGCACGCGTTGCCGATCTCTGAGGAGGATCCGCCCGTCGATTGG
GAATCTCAAAAATCTTCAAACAATTGATGTCAGACAAAGCTTAGTGCATGAACTGCCGTG
TTCCTTTTGGAAGATCACATCGCTAAGGCATGTGTTTGGCTCTGAGCTGATCGTGCCAAG
ATGGACTCGTGAACTGAAACAGCTAAATACACTCAAGTCGGTGAGAGCATTGCAGGATTG
GGATGGCTCTATGTTGAGAAGAATGGTTAACCTCAAGTTACTGGATGTGACTATCCAAGA
GAAGCTCAAAGAGGAGAAGGCGCGCAAGTTATCAGACAACCTTAACAATCTCAACAACCT
TACTACACTGATCTTGAAAGGAGTTGACCTCCCAATCTCTAGCATTTTTACGGCACCTTC
CCTGCAATTCCTCAAGACTATAGAACTAACCGGAACCATCCTGCTCACAACTCCATCACC
AGAAATAGACAAGATGACCACTTCACCTTCTGATTTCCAGCTGCCGAACTTGAGCAAATT
GTCATTGTCAAAGACGTGTCTGCAACAAGGGTTCATTGGAAAGCTAGGCAAGCTGCCCCT
TCTTTCCAATCTCACACTCAAGGATGTTTCTTGTGACGGAGAAGAGCTTGTTTTCAGGCC
TGATGGGTTTCATTGCTTGAAAAAATTGGAAGTAAACGACACGTCCAAACGTGTTGTGAT
AGAGGAGCATGCTTTGCCTGTATTGGTCTCTTTGCATATCATTGGGAACAGTAGAAATTA
CCAACACTCGATCCATCCTACTCACAAGATTATCAACAAGATTAGACATGAGGACATAAA
TCTTTTTCAGCGTATCTGCACTTGTCATCAGAAAGAGATAACCAAAGGCTAACAAGCATA
TATCCTTGTAAGTTTGTCAAATTATATCGCTTTAGCTCTGTATTTTTCCATCATATGTTG
TTTACATGCATGTAACAATTGGATATCCTTCTTTTTGCTAATTTCCAGTGTTAGGAAGAG
TCCTTCGAAGTGAAAGTTGTACGATGTCATCGACGAAGAGTCAGTTTCCTCTTCAAAATG
TCATCGACAATCATAAACCAATTCTGCAATATGACATTGCGAAAGTGATTTCCTTCTGTT
TGCAATTTTTACACAATGCGCAAATTACCTGTAAGTAGACTTGTACTTCGTTTTCTTGTT
TTCGTTTTTCTCAGGAGTCGGGTGTTGACGTGTTGTAGTTCGTCATTAATTTCGTTTCCT
TGTGCGCGGAAATGCGACCCGCCTCCTGGATCATTCTGTACTATTGCAACTTACACAACC
ACTGAATAAACTCG

consensusID : consensus_4248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1073
fasta sequence 
                              [TCAATAACACAATTGTTGATAATTGTTGGATTACTTTGTGAGTAAAAACCACTCACTTCACTAATCCCCTGATCGTTCCATCCATTGAAGTAGGCAGAAAAGAAAGCAAAAACTAATACAGTAGCTTAATAAGGAAGGTCCAGCAGCCAATTAGTCCACTTAATCACCCATGGATCGCGAAATGTTGTCTTCGTTTGCTCCTTCCTTGCGACCTGGTTGATCTGCACTTATGCAATACGCTGCTTCTCTCCCGAAGCCATGCGGCTGCTGCTCTGCATGCAGGGCAGGGGGTTCTGCCGAGATGGAGCTGAGGCTCAAGCCCCAACGGTGAATCCGCCCCCCGAGCTTCTTCTTTGTGAGAGCAATCACTTCGCTAGGATCCTGCTTGGTGTGCATATACGCATCGATCTTGTTCAATTCCTTAATGAAAATCTGTATGTTAGCCCTTCCTTCAGTAATATCATAGTTCTTTATGCCAGCAAACAGTGTCTGAAATCCATCAATAAAAGGTGCATACGCAATGTCAACCAGACTAAATTGGCCAAGGAAGAATGGGCCATCATCAAATTTTGATAGGGAGAATTCTATGTTGTCTAGGGCAGCAGCAGCTTCTGCTGTCATAGCATCCTTGGAGATCAGAGCGGAACGCACAGCCTGATTGAAGATATCTGAATAAGCCAGGAGTTCTTCTGCAAGCCTTTGCTTTTCAGAATCATCAGGAGTCAATCTGGGGCCTGCAAAGTTGATGTCTATGTACTTGATCAAATGCAAACTCTCTCCAATGATTTTGTTGTTGTGCTCCAGGGATGGCAGCGTATTCTTGGGGTACACCTCCTTGTACCATGCTGGCCTATCATTCGTGTCCATGGGGACTAATTTGATCTTCTCCTGCAAACCCTTGTAGTTCCTTGCGATCCATGCCCGTTGCGCATATGGGCAAATGTTGACATGTACAATCTGCCATTGCAACTTTTTATACATTAGCAAGGTCGAGATGATTTGACAAATGCAGATCAAGGTGATTGTGGACGTTACAGATAGCATATTTTCTGAAAGATTTGAAAGGGAGAAGG]

[-] EMBL AY332468             [TCAATAACACAATTGTTGATAATTGTTGGATTACTTTGTGAGTAAAAACCACTCACTTCACTAATCCCCTGATCGTTCCATCCATTGAAGTAGGCAGAAAAGAAAGCAAAAACTAATACAGTAGCTTAATAAGGAAGGTCCAGCAGCCAATTAGTCCACTTAATCACCCATGGATCGCGAAATGTTGTCTTCGTTTGCTCCTTCCTTGCGACCTGGTTGATCTGCACTTATGCAATACGCTGCTTCTCTCCCGAAGCCATGCGGCTGCTGCTCTGCATGCAGGGCAGGGGGTTCTGCCGAGATGGAGCTGAGGCTCAAGCCCCAACGGTGAATCCGCCCCCCGAGCTTCTTCTTTGTGAGAGCAATCACTTCGCTAGGATCCTGCTTGGTGTGCATATACGCATCGATCTTGTTCAATTCCTTAATGAAAATCTGTATGTTAGCCCTTCCTTCAGTAATATCATAGTTCTTTATGCCAGCAAACAGTGTCTGAAATCCATCAATAAAAGGTGCATACGCAATGTCAACCAGACTAAATTGGCCAAGGAAGAATGGGCCATCATCAAATTTTGATAGGGAGAATTCTATGTTGTCTAGGGCAGCAGCAGCTTCTGCTGTCATAGCATCCTTGGAGATCAGAGCGGAACGCACAGCCTGATTGAAGATATCTGAATAAGCCAGGAGTTCTTCTGCAAGCCTTTGCTTTTCAGAATCATCAGGAGTCAATCTGGGGCCTGCAAAGTTGATGTCTATGTACTTGATCAAATGCAAACTCTCTCCAATGATTTTGTTGTTGTGCTCCAGGGATGGCAGCGTATTCTTGGGGTACACCTCCTTGTACCATGCTGGCCTATCATTCGTGTCCATGGGGACTAATTTGATCTTCTCCTGCAAACCCTTGTAGTTCCTTGCGATCCATGCCCGTTGCGCATATGGGCAAATGTTGACATGTACAATCTGCCATTGCAACTTTTTATACATTAGCAAGGTCGAGATGATTTGACAAATGCAGATCAAGGTGATTGTGGACGTTACAGATAGCATATTTTCTGAAAGATTTGAAAGGGAGAAGG]




>consensus_4248#1
TCAATAACACAATTGTTGATAATTGTTGGATTACTTTGTGAGTAAAAACCACTCACTTCA
CTAATCCCCTGATCGTTCCATCCATTGAAGTAGGCAGAAAAGAAAGCAAAAACTAATACA
GTAGCTTAATAAGGAAGGTCCAGCAGCCAATTAGTCCACTTAATCACCCATGGATCGCGA
AATGTTGTCTTCGTTTGCTCCTTCCTTGCGACCTGGTTGATCTGCACTTATGCAATACGC
TGCTTCTCTCCCGAAGCCATGCGGCTGCTGCTCTGCATGCAGGGCAGGGGGTTCTGCCGA
GATGGAGCTGAGGCTCAAGCCCCAACGGTGAATCCGCCCCCCGAGCTTCTTCTTTGTGAG
AGCAATCACTTCGCTAGGATCCTGCTTGGTGTGCATATACGCATCGATCTTGTTCAATTC
CTTAATGAAAATCTGTATGTTAGCCCTTCCTTCAGTAATATCATAGTTCTTTATGCCAGC
AAACAGTGTCTGAAATCCATCAATAAAAGGTGCATACGCAATGTCAACCAGACTAAATTG
GCCAAGGAAGAATGGGCCATCATCAAATTTTGATAGGGAGAATTCTATGTTGTCTAGGGC
AGCAGCAGCTTCTGCTGTCATAGCATCCTTGGAGATCAGAGCGGAACGCACAGCCTGATT
GAAGATATCTGAATAAGCCAGGAGTTCTTCTGCAAGCCTTTGCTTTTCAGAATCATCAGG
AGTCAATCTGGGGCCTGCAAAGTTGATGTCTATGTACTTGATCAAATGCAAACTCTCTCC
AATGATTTTGTTGTTGTGCTCCAGGGATGGCAGCGTATTCTTGGGGTACACCTCCTTGTA
CCATGCTGGCCTATCATTCGTGTCCATGGGGACTAATTTGATCTTCTCCTGCAAACCCTT
GTAGTTCCTTGCGATCCATGCCCGTTGCGCATATGGGCAAATGTTGACATGTACAATCTG
CCATTGCAACTTTTTATACATTAGCAAGGTCGAGATGATTTGACAAATGCAGATCAAGGT
GATTGTGGACGTTACAGATAGCATATTTTCTGAAAGATTTGAAAGGGAGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4248#0      AATACGACAAGGGCACAACCACAAATTCAATAACACAATTGTTGATAATTGTTGGATTAC 60
consensus_4248#1      --------------------------TCAATAACACAATTGTTGATAATTGTTGGATTAC 34
                                                **********************************

consensus_4248#0      TTTGTGAGTAAAAACCACTCACTTCCCTAATCCCCTGATCGTTCCATCCATTGAAGTAGG 120
consensus_4248#1      TTTGTGAGTAAAAACCACTCACTTCACTAATCCCCTGATCGTTCCATCCATTGAAGTAGG 94
                      ************************* **********************************

consensus_4248#0      AAAAAAAAAGAAACAAAAACTAATACAGTAGCTTAATAAGGAAGGTCTAGCAGCCAATTA 180
consensus_4248#1      CAGAAAAGA-AAGCAAAAACTAATACAGTAGCTTAATAAGGAAGGTCCAGCAGCCAATTA 153
                       * **** * ** ********************************** ************

consensus_4248#0      GTCCACTTAATCACCCATGGATCGCGATATGTTGTCTTTGTTTGCTCCTTCCTTGCGACC 240
consensus_4248#1      GTCCACTTAATCACCCATGGATCGCGAAATGTTGTCTTCGTTTGCTCCTTCCTTGCGACC 213
                      *************************** ********** *********************

consensus_4248#0      TGGTTGATCTGCACTTATGCTATACGCTGCTTCTCTCCCGAAACCATGCGGCTGCTGCTG 300
consensus_4248#1      TGGTTGATCTGCACTTATGCAATACGCTGCTTCTCTCCCGAAGCCATGCGGCTGCTGCTC 273
                      ******************** ********************* **************** 

consensus_4248#0      GTTCTGCCGAGATGGAGCTGGGGCTCAAGCCCCAACGAGCCCCAACGAGCCCCAACGGTG 360
consensus_4248#1      TGCATGCAGGGCAGGGGGTTCTGCCGAGATGGAGCTGAGGCTCAA---GCCCCAACGGTG 330
                          *** * *  ** * *   **  *         *** * ***   ************

consensus_4248#0      AATCCGCCCCTGCTAGTCGTAGCTAGCTAGCGAGTGAATCAGTGGAGTGACGAGAGATCT 420
consensus_4248#1      AATCCGCCCC--CCGAGCTT--CTTCTTTGTGAG---AGCAATCACTTCGCTAG-GATCC 382
                      **********  *    * *  **   * * ***   * ** *    *  * ** **** 

consensus_4248#0      CGCGATGGCGAAGGCGGTGGTGCTGCCGCTGGTTAGCAAGCTTCAGGAGGTGGCCCTGAG 480
consensus_4248#1      TGC-------------TTGGTG-TGCATATACGCATCGATCTTGTTCAATT--CCTTAAT 426
                       **              ***** ***   *    * * * ***    *  *  ** * * 

consensus_4248#0      CGAGGGGAGGGCGCTGGTTGGCGTCGGCGGCGAGATCAACCGCCTCCGCGACAAGCTCAT 540
consensus_4248#1      GAAAATCTGTATGTTAGCCC-TTCCTTCAGTAATATCATAGTTCTTTATGCCAGCAAACA 485
                        *     *   * * *       *  * *  * ****     **    * **       

consensus_4248#0      GTGGCTGATGGCCTTCCTCCAGGAGGCGGACCCCCAGAGGCGGGCGGCCGACGCCGGCGG 600
consensus_4248#1      GTGTCTGA-AATCCATCAATAAAAGGTGCATACGCAATGTCAACCAGACTAAATTGGCCA 544
                      *** ****    *   *   *  *** * *  * **  * *   * * * *    ***  

consensus_4248#0      CGAGCTCATGCGCGTGCTCGTGCACCAGAACCGCGACGCCGCGTTCAGCGCCGAGGACGC 660
consensus_4248#1      AGGAAGAATGGGC-----CATCATCAAATTTTGATAGGGAGAATTCTATGTTGTCTAGGG 599
                       *     *** **     * *   * *     *  * *  *  ***   *  *   * * 

consensus_4248#0      CCTCGACGACTACGCCGTCCGCGTCGACCTGTCCCGCTACCCCGGCTGGTCGCGCGCCGC 720
consensus_4248#1      CAGCAGCAGCTTCTGCTGTCATAGCATCCT---TGGAGATCAGAGCGGAACGCACAGCCT 656
                      *  *  *  ** *  *   *    *  ***     *  * *   ** *  *** *  *  

consensus_4248#0      CGTCGGCTTCCTCGCCGGCATCACCACCCAGCTGCGCGTCCGCCACAGGCTCTCCAGCGA 780
consensus_4248#1      GATTGAAGATATC---TGAATAAGCCAGGAGTTCTTCTGCAAGCCTTTGCTTTTCAGAAT 713
                        * *      **    * ** * *    ** *   *  *   *    *** * ***   

consensus_4248#0      CATCGCG-GCCATCCATGCCCGCTTTGAGGAGATCGTCGGCAACAAGGACAAGTACAGGC 839
consensus_4248#1      CATCAGGAGTCAATCTGGGGCCTGCAAAGTTGATGTCTATGTACTTGATCAAATGCAAAC 773
                      ****  * * **  *  *  *      **  ***        **  *  *** * **  *

consensus_4248#0      TGGAGGGCTCTGCGCCCTCGTCGTTGCTGACGTGGACTGCCTCCGCCGCCTCCTCGAGTG 899
consensus_4248#1      T------CTCTCCAATGATTTTGTTGTTGTGCTCCAGGGATGGCAGCGTATTCTTG---G 824
                      *      **** *       * **** **   *  *  *    *  **  * ** *   *

consensus_4248#0      AATCAATCCTCTGGGGTACATCCAAGCCACCAATTATCGGGCGTGACGACCAGCAGCAGG 959
consensus_4248#1      GGTACACCTCCTTGTAC-CATGCTGGCCTATCATTCGTGTCCATGGGGACTAATTTGATC 883
                        *  * *  ** *    *** *  ***    ***   *  * **  *** *     *  

consensus_4248#0      AACTAGAGGCAATGCTTCTCAGCTCCGCAGGATGCCTCGCCGTAATATATGTCGTCGGCG 1019
consensus_4248#1      TTCTCCTG-CAAACCCTTGTAGTTCCTTGCGATCCATGCCCGTTGCGCATATGGGCAA-- 940
                        **   * ***  * *   ** ***    *** * *  ****     ** * * *    

consensus_4248#0      ATAGTGGTGTTGGTAAGACGATCCTTGTAAACAGTGTCTGTTCAAAACCATCTGTCAGAG 1079
consensus_4248#1      ATGTTGACATGTACAAT-CTGCCATTGCA---ACTTTTTATACATTAGCAA--GGTCGAG 994
                      **  **   *    **  *   * *** *   * * * * * **  * **   *   ***

consensus_4248#0      AACACTTCAAAGA-GCGAATTGGAGTGAAGGTCGGAAAAGATGCTGGTATATCCAACATC 1138
consensus_4248#1      ATGATTTGACAAATGCAGATCAAGGTGATTGTGGACGTTACAGATAGCATATTT--TCTG 1052
                      *  * ** * * * **  **    ****  ** *        * * * ****      * 

consensus_4248#0      CTGAGTTTGATAAGCAAAGAACTGAAGAAAGAAAATAACGAAAGTGACAATGAGAATCCT 1198
consensus_4248#1      AAAGATTTGAAAGGGAGAAGG--------------------------------------- 1073
                           ***** * * * *                                          

consensus_4248#0      AGAAGCAAGATACAAAGACGTCTTGGTGAAGAGTGCTACTTGATCATCATCGATGGCAGG 1258
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CAGATGTCCATCGCTGACTGGAATGCTGTGATCCATGCTCTTCCGAAGAACGAAAGAGGT 1318
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AGTCGGGTAGTGCTCATCACGAAAATAAAACCACAGTTTCTAGACCACCCAATGAATGAT 1378
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GTCCATGAGATAAAGCTGACATGCCTCAATCAAACGGACTGCAGGAAGCTGTTCCACATG 1438
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AGGCTCCATGGCAAAGAGGAGGATGAACAAAACCAAACCTACCTGCCAATATACTACCAG 1498
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CGTGTGTATGACATTACCGGGGGCTCGCCATTGGCAGTTATCCTGCTTGCTGGACTCATG 1558
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CACAACAAGGAGTATCCACATGAATGGGATAGGGTGTTAAAATACCTCGAGTCAGCCAAA 1618
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GAGAAGCGGCTCAACAGGATACTGTCCCTGAGCTTCGATGACCTGCACCATGAGCTCAAG 1678
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CTCTGCTTCCTCTACTTCACAGCATTCCCGGTCAGCTACAAGGTGTACCAGAACGTGCTT 1738
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GTCAACTTGTGGGTATCAGAGGGCTTTGTGGTGCCGCGGCACGGGAAGACGGTACAGCAA 1798
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CTGGGACAGCTATACCTGAGGCAGCTTACCACTAGGGGACTAGTTACTGAAGCATCAGCT 1858
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GATGGTGACTACGACATCCGCCACTTTTTCCTCCATGACAGTGTCTACTTGTTTGCACGG 1918
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TCAGAGGCACATGAGGCAAACTTCATGGAGCTGCATGATGGTGACTACTTCCCATCGCCG 1978
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GACAGGGCTCGACGCCTCACACTACATAACAGTATGGACAGATACGCGGCACTAGATAAC 2038
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AAGATGCCCAAGCTACGGTCCATCTTTGCAATCTTCGAAGAGATACCAGCCAGCACAGCA 2098
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GAAGAAAGTGTATCATCTCCTAGCTGCTTCCCCACCTGCTGTTCATGCGAGCAGCACAGA 2158
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TCACCGAAAATTTCAAGATTTGACCTCACCAAGCTGCTGAAAAGATCCAAGTTCCTACGA 2218
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GTAATCATGATCGAAGGCCTGAATATCGGCACCGAGTTGCCTGAGGCAATCGGAGGCATG 2278
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GTGCATCTCCGTTACCTTAGCACGCGTTGCCGATCTCTGAGGAGGATCCGCCCGTCGATT 2338
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GGGAATCTCAAAAATCTTCAAACAATTGATGTCAGACAAAGCTTAGTGCATGAACTGCCG 2398
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TGTTCCTTTTGGAAGATCACATCGCTAAGGCATGTGTTTGGCTCTGAGCTGATCGTGCCA 2458
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AGATGGACTCGTGAACTGAAACAGCTAAATACACTCAAGTCGGTGAGAGCATTGCAGGAT 2518
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TGGGATGGCTCTATGTTGAGAAGAATGGTTAACCTCAAGTTACTGGATGTGACTATCCAA 2578
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      GAGAAGCTCAAAGAGGAGAAGGCGCGCAAGTTATCAGACAACCTTAACAATCTCAACAAC 2638
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CTTACTACACTGATCTTGAAAGGAGTTGACCTCCCAATCTCTAGCATTTTTACGGCACCT 2698
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TCCCTGCAATTCCTCAAGACTATAGAACTAACCGGAACCATCCTGCTCACAACTCCATCA 2758
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CCAGAAATAGACAAGATGACCACTTCACCTTCTGATTTCCAGCTGCCGAACTTGAGCAAA 2818
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TTGTCATTGTCAAAGACGTGTCTGCAACAAGGGTTCATTGGAAAGCTAGGCAAGCTGCCC 2878
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CTTCTTTCCAATCTCACACTCAAGGATGTTTCTTGTGACGGAGAAGAGCTTGTTTTCAGG 2938
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CCTGATGGGTTTCATTGCTTGAAAAAATTGGAAGTAAACGACACGTCCAAACGTGTTGTG 2998
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      ATAGAGGAGCATGCTTTGCCTGTATTGGTCTCTTTGCATATCATTGGGAACAGTAGAAAT 3058
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TACCAACACTCGATCCATCCTACTCACAAGATTATCAACAAGATTAGACATGAGGACATA 3118
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AATCTTTTTCAGCGTATCTGCACTTGTCATCAGAAAGAGATAACCAAAGGCTAACAAGCA 3178
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TATATCCTTGTAAGTTTGTCAAATTATATCGCTTTAGCTCTGTATTTTTCCATCATATGT 3238
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TGTTTACATGCATGTAACAATTGGATATCCTTCTTTTTGCTAATTTCCAGTGTTAGGAAG 3298
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      AGTCCTTCGAAGTGAAAGTTGTACGATGTCATCGACGAAGAGTCAGTTTCCTCTTCAAAA 3358
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TGTCATCGACAATCATAAACCAATTCTGCAATATGACATTGCGAAAGTGATTTCCTTCTG 3418
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TTTGCAATTTTTACACAATGCGCAAATTACCTGTAAGTAGACTTGTACTTCGTTTTCTTG 3478
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      TTTTCGTTTTTCTCAGGAGTCGGGTGTTGACGTGTTGTAGTTCGTCATTAATTTCGTTTC 3538
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CTTGTGCGCGGAAATGCGACCCGCCTCCTGGATCATTCTGTACTATTGCAACTTACACAA 3598
consensus_4248#1      ------------------------------------------------------------
                                                                                  

consensus_4248#0      CCACTGAATAAACTCG 3614
consensus_4248#1      ----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)