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Oryza sativa
cluster # 4262 cluster # 4262       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4262#0 length = 1102 sequences # 2  
consensus_4262#1 length = 618 sequences # 1  

consensusID : consensus_4262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1102
fasta sequence
                              [GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT]

[+] EMBL AK101221             [GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT]
[+] EMBL CB682990             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGT                                                                                 ]


>consensus_4262#0 GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACC ATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCC GCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGA GTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAA AAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAAT ACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAG AGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAA CCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCA AAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTC CTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATA CTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAA ATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGAT GTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGT CATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTT GAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCG TGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTAT ATTTTTCTTTAGTGAACAGCCT



consensusID : consensus_4262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence
                              [GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA]

[+] EMBL CB966395             [GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA]


>consensus_4262#1 GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCG GGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTC GCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCT TCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTA TTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAG ACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTAC TTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGA ACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGG GAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTG TATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACA GTAGCATCAGAAACCACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4262#0      GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACC 60
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      ATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCC 120
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      GCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 180
consensus_4262#1      ----GGGGCTAACTTGAGGTG--CGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 54
                           ** *   ** * **    *************************************

consensus_4262#0      GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 240
consensus_4262#1      GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 114
                      ************************************************************

consensus_4262#0      TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGA 300
consensus_4262#1      TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCA-----GCTCTCGC 169
                      ****************************************   ***      * **  * 

consensus_4262#0      GTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAA 360
consensus_4262#1      GGTGACCCC------CTTCCCGTTATGACTGCG--TGACCCGCATCGCTTCTGACCAAAT 221
                      * *** **       *  **  * * **  * *  ***   *    **** **     * 

consensus_4262#0      AAGTTAA--ATCGATTTGAGGACTGGGACAAG-GCAGCATTG-CGCCCAACCACTACAGT 416
consensus_4262#1      GTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCC 281
                         ** *  *    * * *  * **   ** * ** ** * *  *  *      *     

consensus_4262#0      GAATACACAGGCAGCAGCAAGGTTCA-TTGGTCACTCATTGCCCCATTTGACAACTGATC 475
consensus_4262#1      GGATGAACA--CCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATAT-ATATATATAC 338
                      * **  ***  *   * ****    * ** ** *    *  * * ** * * *  *   *

consensus_4262#0      AGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGA 535
consensus_4262#1      TCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCA------CATTCTAT-AGTAGTA 391
                          *    * ** *   * *    ** *        *       * ***   *  *  *

consensus_4262#0      GAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCC 595
consensus_4262#1      GACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGT-----------GTATCC 440
                      ** *  *     ** *   *****  *  *   * *** * *               ***

consensus_4262#0      TTGCAAAAGCAGCTCTGGAGCTTAGTGG-GCATAATGATAGCAAGGTGAAGGGCCCTATT 654
consensus_4262#1      TTATATAGGT--TTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCC 498
                      **  * * *    ***      *  *    * *  * ** *  *      *  ** *   

consensus_4262#0      AGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGAT 714
consensus_4262#1      ATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGT--ATTTAGACCAAGG-C 555
                      *   ** * *        *    ***** *  ** *    ***   ***   *** **  

consensus_4262#0      GAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATC 774
consensus_4262#1      AAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACC 615
                       **  **         *   ***  **   *  * ** *** * *      ** * ** *

consensus_4262#0      AAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAG 834
consensus_4262#1      ACA--------------------------------------------------------- 618
                      *                                                           

consensus_4262#0      CTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCT 894
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      GAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATG 954
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      GCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCC 1014
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      GTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATG 1074
consensus_4262#1      ------------------------------------------------------------
                                                                                  

consensus_4262#0      TATTATATTTTTCTTTAGTGAACAGCCT 1102
consensus_4262#1      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)