These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence [GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT] [+] EMBL AK101221 [GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACCATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCCGCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAAAAGTTAAATCGATTTGAGGACTGGGACAAGGCAGCATTGCGCCCAACCACTACAGTGAATACACAGGCAGCAGCAAGGTTCATTGGTCACTCATTGCCCCATTTGACAACTGATCAGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGAGAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATGTATTATATTTTTCTTTAGTGAACAGCCT] [+] EMBL CB682990 [ CTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGAGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCCGTAGCGT ] consensusID : consensus_4262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA] [+] EMBL CB966395 [GGGGCTAACTTGAGGTGCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCGGCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCGTTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCAGCTCTCGCGGTGACCCCCTTCCCGTTATGACTGCGTGACCCGCATCGCTTCTGACCAAATGTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCCGGATGAACACCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATATATATATATACTCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCACATTCTATAGTAGTAGACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGTGTATCCTTATATAGGTTTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCCATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGTATTTAGACCAAGGCAAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4262#0 GCAAAACCCAAAACTCCCCTGCCCCATCACCGCCGTCTGCCCGTCTTCATCCACCCAACC 60 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 ATGGCCGCCGCCGCCGCCGCCGATTCCACTTCGGCGGTGCCACCCGCCGTGGTGTCCGCC 120 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 GCCGAGGACACCCTCGCGGCCGCCGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 180 consensus_4262#1 ----GGGGCTAACTTGAGGTG--CGAGTCCGTCGGGGACCACCTCGCCGAGATGGTCGCG 54 ** * ** * ** ************************************* consensus_4262#0 GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 240 consensus_4262#1 GCGGCGGGCGAGGACCCCGACGCCATCGCCGAGCTCCCGCCGCTGCGCCGCGCGCGCGCG 114 ************************************************************ consensus_4262#0 TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGTGCGGCTTAGGTGTTCGGGA 300 consensus_4262#1 TTTCTCGCCATGGCGAAGGCCGCCGCCTCCCTCTTCGCAGGCAGGCA-----GCTCTCGC 169 **************************************** *** * ** * consensus_4262#0 GTTGATCCGGATGAACACCCTATCAAGAAGGAGTTTGAGAGGTTAAGCTTGTGGGAGGAA 360 consensus_4262#1 GGTGACCCC------CTTCCCGTTATGACTGCG--TGACCCGCATCGCTTCTGACCAAAT 221 * *** ** * ** * * ** * * *** * **** ** * consensus_4262#0 AAGTTAA--ATCGATTTGAGGACTGGGACAAG-GCAGCATTG-CGCCCAACCACTACAGT 416 consensus_4262#1 GTTTTTATTACTATTATTATTATTGTTGCACGTGCGGCTTAGGTGTTCGGGAGTTGATCC 281 ** * * * * * * ** ** * ** ** * * * * * consensus_4262#0 GAATACACAGGCAGCAGCAAGGTTCA-TTGGTCACTCATTGCCCCATTTGACAACTGATC 475 consensus_4262#1 GGATGAACA--CCCTATCAAGACGGAGTTTGTAAGCTCTCTCTCTATAT-ATATATATAC 338 * ** *** * * **** * ** ** * * * * ** * * * * * consensus_4262#0 AGAAGAGGAGCATGCAGGCAATCAGTAGAGGAGAAGGAGGGAGTTACTCTGGGAACAAGA 535 consensus_4262#1 TCCTGCCCCGAATCCTATCTACTTCTATATTGTTCTCA------CATTCTAT-AGTAGTA 391 * * ** * * * ** * * * *** * * * consensus_4262#0 GAAAACCACAACCACCGCGGCCAAATAAGAAGTCTGTTCGTGCTGCCACGGAAGAATTCC 595 consensus_4262#1 GACATTCGGTTTCAGCTTTGCCAATAAGAACAACCGTTTGGGT-----------GTATCC 440 ** * * ** * ***** * * * *** * * *** consensus_4262#0 TTGCAAAAGCAGCTCTGGAGCTTAGTGG-GCATAATGATAGCAAGGTGAAGGGCCCTATT 654 consensus_4262#1 TTATATAGGT--TTCTAATTTATGTTAACACTTTCTAATCGGGAATCTTTGTACCATGCC 498 ** * * * *** * * * * * ** * * * ** * consensus_4262#0 AGGCTCCTCTCTGATGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGGGAT 714 consensus_4262#1 ATATTCTTGTAACGACGCGTCATGGACTTATTTTATACCCTGT--ATTTAGACCAAGG-C 555 * ** * * * ***** * ** * *** *** *** ** consensus_4262#0 GAAATACTAGCTGCCTACTTCAAAGAATGGATAAAGTGCGGTATAACTTACTCTGCAATC 774 consensus_4262#1 AAACCACCCTGCTTTCATCCCAAGCAAATAACGAGGTTCGGCACAGTAGCATCAGAAACC 615 ** ** * *** ** * * ** *** * * ** * ** * consensus_4262#0 AAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTAGACAAG 834 consensus_4262#1 ACA--------------------------------------------------------- 618 * consensus_4262#0 CTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCT 894 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 GAATGTCATTTTCAGAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATG 954 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 GCAGTTGAGTCCATTGCTGAAGATTTGATCTAGTGGTGTTTGAGACTGTTTAACATCGCC 1014 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 GTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGTATGATG 1074 consensus_4262#1 ------------------------------------------------------------ consensus_4262#0 TATTATATTTTTCTTTAGTGAACAGCCT 1102 consensus_4262#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||