These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1814 fasta sequence [CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCCGCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAGACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCCCTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGGTGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGGTTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGGCTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTGATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACATCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACACGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACTACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTGACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTGGTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTGATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCATCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGGCCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACGGGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCTGTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTA-GAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACAATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTATTCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAGGAAGGAGAGAAAAA] [+] EMBL AK122045 [CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCCGCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAGACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCCCTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGGTGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGGTTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGGCTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTGATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACATCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACACGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACTACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTGACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTGGTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTGATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCATCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGGCCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACGGGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCTGTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTA GAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACAATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTG ] [+] EMBL BI803408 [ TCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTACGAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAAC ATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTATTCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAGGAAGGAGAGAAAAA] consensusID : consensus_4263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTATACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTGACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTGGTGGTGC] [+] EMBL AA753028 [GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTATACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTGACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTGGTGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4263#0 CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCC 60 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 GCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAG 120 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 ACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCC 180 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGG 240 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGG 300 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGG 360 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTG 420 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 ATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACA 480 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACA 540 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACT 600 consensus_4263#1 --GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTA-T 57 * ** * * * ***************************************** * consensus_4263#0 ACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATC 660 consensus_4263#1 ACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATC 117 ******************** *************************************** consensus_4263#0 ATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGT 720 consensus_4263#1 ATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGT 177 **************************************** ******************* consensus_4263#0 CTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATT 780 consensus_4263#1 CTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATT 237 ************************************************************ consensus_4263#0 ACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGC 840 consensus_4263#1 ACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGC 297 ****************************** ***************************** consensus_4263#0 ATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGG 900 consensus_4263#1 ATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGG 357 ************************************************************ consensus_4263#0 ATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTT 960 consensus_4263#1 ATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTT 417 ************************************************************ consensus_4263#0 TAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTG 1020 consensus_4263#1 TAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTG 477 **************************************** ******* *********** consensus_4263#0 CTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTG 1080 consensus_4263#1 CTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTG 537 ******************************************************* **** consensus_4263#0 ACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGG 1140 consensus_4263#1 ACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGG 597 ******************** *************************************** consensus_4263#0 CAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTG 1200 consensus_4263#1 CAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTG 657 ************** ******************** ** ********** * ******** consensus_4263#0 GTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTG 1260 consensus_4263#1 GTGGTGC----------------------------------------------------- 664 ******* consensus_4263#0 ATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCA 1320 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGG 1380 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACG 1440 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 GGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCT 1500 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 GTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTC 1560 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 AGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAA 1620 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 CAAACCATTATGTAGTAGAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACA 1680 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 ATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTAT 1740 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 TCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAG 1800 consensus_4263#1 ------------------------------------------------------------ consensus_4263#0 GAAGGAGAGAAAAA 1814 consensus_4263#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||