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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1814 fasta sequence
[CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCCGCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAGACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCCCTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGGTGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGGTTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGGCTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTGATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACATCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACACGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACTACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTGACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTGGTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTGATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCATCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGGCCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACGGGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCTGTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTA-GAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACAATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTATTCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAGGAAGGAGAGAAAAA]
[+] EMBL AK122045 [CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCCGCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAGACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCCCTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGGTGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGGTTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGGCTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTGATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACATCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACACGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACTACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTGACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTGGTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTGATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCATCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGGCCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACGGGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCTGTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTA GAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACAATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTG ]
[+] EMBL BI803408 [ TCAAGATTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAAACCATTATGTAGTACGAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAAC ATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTATTCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAGGAAGGAGAGAAAAA]
consensusID : consensus_4263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTATACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTGACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTGGTGGTGC]
[+] EMBL AA753028 [GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTATACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATCATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGTCTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATTACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGCATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGGATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTTTAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTGCTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTGACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGGCAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTGGTGGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4263#0 CACATTCTCTCCTCGTCTCCTCCTCCGCCTCAAACCTCGCCGCCGGCGGCCGCCACCCCC 60
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 GCCGCCGCTCTCTTCTCCCCCCATTCCCGAACCCCTCCTCTCCGTCCCCCACCCGCCCAG 120
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 ACCCCCGCTCAGCTCTTCGCCGCGGGGCGCGAAGCCCGACGTCGCGCAAGCCCAGCCTCC 180
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 CTCCGGCGAGTCCCCGTTCCCTCGGTTCTTCTTCTTCCTCGGGGGAGACGCCCTCCTCGG 240
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 TGGCTCTACCGGGACCTGAGCCGCCGTGGAGTGAGGATCCGGGTTTCTGCATCCCGCTGG 300
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 TTTCAGTTGGGGGGGGGGGTGCGATGGCTGGGTGCGGCGGCGGCTGGGTGGCTCGGCTGG 360
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 CTGCGCTCCTCGTCGTCGGGTTCGTGCTCGGCTCCGTCGACGCCAGCCTTGGCGATGTTG 420
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 ATCCGCAGTACAGAACTTGCGTGGAGGAGTGTCATACTACAGGGATTATCGGGGAGAACA 480
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 TCATAAGCCACTGCCAGTCCCCAGGGAATGATGACGCGTCTGTTGGAAGTTCTTGGTACA 540
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 CGCAGGAGCCCCTATACATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTACT 600
consensus_4263#1 --GANGATTCGCCCNAGATGCAGTGGAAGCAACTAAACTGTATGAATGACTGCCGTTA-T 57
* ** * * * ***************************************** *
consensus_4263#0 ACTGCATGATGCAAAGAGAAGGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATC 660
consensus_4263#1 ACTGCATGATGCAAAGAGAANGTGAAAGGCAATCACGTGGTCTGAACCCTGTTAAGTATC 117
******************** ***************************************
consensus_4263#0 ATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGAGCCACTCTCAGCTGCACTGT 720
consensus_4263#1 ATGGAAAATGGCCCTTCATACGTGTTTCTGTCTTCCAAGANCCACTCTCAGCTGCACTGT 177
**************************************** *******************
consensus_4263#0 CTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATT 780
consensus_4263#1 CTGCTGTCAACCTATTGATGCACTTCACTGGCTGGCTTTCATTTTTCCTGCTGGTGAATT 237
************************************************************
consensus_4263#0 ACAAATTACCTGTTAGACCCCAAACTAAGAGGACATACTACGAATACACTGGATTATGGC 840
consensus_4263#1 ACAAATTACCTGTTAGACCCCAAACTAAGANGACATACTACGAATACACTGGATTATGGC 297
****************************** *****************************
consensus_4263#0 ATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGG 900
consensus_4263#1 ATATATATGCAATATTATCAATGAACGCATGGTTTTGGAGCTCTATATTCCATACTAGGG 357
************************************************************
consensus_4263#0 ATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTT 960
consensus_4263#1 ATATAGACTTGACTGAGAAGTTGGATTACTCTTCAGCTGTGGCTCTACTTGGCTATTCTT 417
************************************************************
consensus_4263#0 TAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAGGCTACCAGGGTGATGTTTG 1020
consensus_4263#1 TAATCCTTTCATTGTTAAGGACTTTCAATGTCAAGGACGAAGCTACCAAGGTGATGTTTG 477
**************************************** ******* ***********
consensus_4263#0 CTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGAGCTTG 1080
consensus_4263#1 CTGCTCCAATTTTGGCATTTGTTACAACACACATCTTGTATCTTAACTTCTATGANCTTG 537
******************************************************* ****
consensus_4263#0 ACTATGGGTGGAACATGAAAGTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGG 1140
consensus_4263#1 ACTATGGGTGGAACATGAAANTTTGCGTGGTGATGGCTGTGGTTCAACTTCTGGCATGGG 597
******************** ***************************************
consensus_4263#0 CAATTTGGGCTGGCATAACCCAGCATCCATCACGATTCAAGCTTTGGGTGGTTGTCTTTG 1200
consensus_4263#1 CAATTTGGGCTGGCNTAACCCAGCATCCATCACGANTCCAGCTTTGGGTNGGTGTCTTTG 657
************** ******************** ** ********** * ********
consensus_4263#0 GTGGTGCACTTGCTATGCTTCTCGAAGTATACGACTTTCCTCCGTACAAGGGATACGCTG 1260
consensus_4263#1 GTGGTGC----------------------------------------------------- 664
*******
consensus_4263#0 ATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATATCTCTGGTGGAGTTTCA 1320
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 TCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGG 1380
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 CCGCAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACG 1440
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 GGTTCCCTATCTAACATCGCCGAATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCT 1500
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 GTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGATTTTGGTCCTCAAACTC 1560
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 AGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAA 1620
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 CAAACCATTATGTAGTAGAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACA 1680
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 ATGAGGGGCCCGTGTCTGCTTATATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTAT 1740
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 TCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAACCTTCCTGAAGTTCCAAAG 1800
consensus_4263#1 ------------------------------------------------------------
consensus_4263#0 GAAGGAGAGAAAAA 1814
consensus_4263#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||