These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2445 fasta sequence [TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACTGATCCGATGGCCGGTCGCCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCTCCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGAAAACCGAGGCATCCTAGCGCTCCTCTCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCTAATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGTATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAATTATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAGGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAGTACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATTCAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACCTCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATGATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTTTTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCAGTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCAAATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCTAATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATCAAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCATTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTTAGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCAGTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAGTTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTTGCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTATTTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAGTGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTATTGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTTTTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC] [+] EMBL CB683877 [TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACT ] [+] EMBL AK099935 [ TCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAGATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAGGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGCGACGGCCAACCCCCGCACGGATCCGATGGCCGGTCGCCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCTCCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGAAAACCGAGGCATCCTAGCGCTCCTCTCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCTAATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGTATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAATTATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAGGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAGTACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATTCAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACCTCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATGATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTTTTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCAGTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCAAATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCTAATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATCAAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCATTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTTAGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCAGTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAGTTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTTGCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTATTTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAGTGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTATTGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTTTTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC] consensusID : consensus_4272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [TCCTCCCCGGGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAGTACATTTGCTT] [-] EMBL CB683433 [TCCTCCCCGGGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAGTACATTTGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4272#0 TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCG 60 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 CTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTC 120 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 ATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTG 180 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 CCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGA 240 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 CAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGG 300 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 ATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACTGATCCGATGGCCGGTCG 360 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 CCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCT 420 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 CCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCC 480 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 GCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGA 540 consensus_4272#1 --------------------------------------------TCCTCCCCGGGACATC 16 * * * ** consensus_4272#0 AAACCGAGGCATCCTAG-CGCTCCTC--TCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCA 597 consensus_4272#1 GCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCA 76 *** ** * ** *** * * **** * * ******************** consensus_4272#0 CCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAA 657 consensus_4272#1 CCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAA 136 ************************************************************ consensus_4272#0 TCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGG 717 consensus_4272#1 TCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGG 196 ************************************************************ consensus_4272#0 CGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACA 777 consensus_4272#1 CGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACA 256 ************************************************************ consensus_4272#0 AGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTT 837 consensus_4272#1 AGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTT 316 ************************************************************ consensus_4272#0 CTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCAC 897 consensus_4272#1 CTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCAC 376 ************************************************************ consensus_4272#0 TGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCT 957 consensus_4272#1 TGCTTGCG---------------------------------------------------- 384 ******** consensus_4272#0 AATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGT 1017 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 ATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAAT 1077 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAG 1137 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 GATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTC 1197 consensus_4272#1 -ATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTC 443 *********************************************************** consensus_4272#0 GACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATG 1257 consensus_4272#1 GACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATG 503 ************************************************************ consensus_4272#0 CTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGT 1317 consensus_4272#1 CTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGT 563 ************************************************************ consensus_4272#0 CAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAG 1377 consensus_4272#1 CAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAG 623 ********************************************** * *********** consensus_4272#0 TACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATT 1437 consensus_4272#1 TACATTTGCTT------------------------------------------------- 634 *********** consensus_4272#0 CAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACC 1497 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATG 1557 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 ATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTT 1617 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCA 1677 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 GTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCA 1737 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 AATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCT 1797 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 AATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATC 1857 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 AAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCA 1917 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTT 1977 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 AGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCA 2037 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 GTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAG 2097 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTT 2157 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 GCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTAT 2217 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAG 2277 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTAT 2337 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTT 2397 consensus_4272#1 ------------------------------------------------------------ consensus_4272#0 TTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC 2445 consensus_4272#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||