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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence
[AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT]
[+] EMBL AK059248 [AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAA ]
[+] EMBL AB088487 [ CAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT]
consensusID : consensus_4273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA]
[-] EMBL CA759049 [ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4273#0 AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATC 60
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAA 120
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGC 180
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGA 240
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 TCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCT 300
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAA 360
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGAT 420
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 TAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCC 480
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 AAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGA 540
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCG 600
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCAT 660
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGAC 720
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGA 780
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 GTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAG 840
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCC 900
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 AAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGG 960
consensus_4273#1 ------------------------------------------------------------
consensus_4273#0 CGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCT 1020
consensus_4273#1 ----------------------ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCT 38
** ** * ***************************
consensus_4273#0 TGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 1080
consensus_4273#1 TGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 98
*********** ************************************************
consensus_4273#0 GAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCT 1140
consensus_4273#1 GAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCT 158
********* ************** **** ******************************
consensus_4273#0 TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 1200
consensus_4273#1 TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 218
************************************************************
consensus_4273#0 GTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 1260
consensus_4273#1 GTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 278
***************** ******************************************
consensus_4273#0 CGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 1320
consensus_4273#1 CGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 338
************** ********************************************
consensus_4273#0 ATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 1380
consensus_4273#1 ATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 398
************************* **********************************
consensus_4273#0 GTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT-------- 1432
consensus_4273#1 GTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATA 458
******************** **************************** **
consensus_4273#0 --------------------------------------
consensus_4273#1 GCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA 496
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||