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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1117 fasta sequence
[AGCCTCTCTCATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCCCTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCGCTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAACTACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCCAAGCT]
[+] EMBL AK060697 [AGCCTCTCTCATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCCCTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCGCTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAACTACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCCAAGCT]
[+] EMBL AK102818 [ GAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGATCATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCTCTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAA ]
consensusID : consensus_4288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence
[TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGTTACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGAACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAACTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCTCATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGCTACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATACTAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAAC]
[-] EMBL AK099969 [TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGTTACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGAACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAACTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCTCATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTGAGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGAGAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATGGGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCGGCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGGGCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTCGCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTCTGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACACCACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGCTACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATACTAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGATGCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCCGCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCATCACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGATCTCCTCTCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4288#0 ------------------------------------------------------------
consensus_4288#1 TAATTATCATCTTGTCTTATTTCTTTCTACAAGGCGATCGAGTACTTGCTTGCTTACAGT 60
consensus_4288#0 ------------------------------------------------------------
consensus_4288#1 TACAGACACTAGAAAAGTACTCCATGGGCGAAATGAAGAGGTAAAACAGCAGCGAATGGA 120
consensus_4288#0 ------------------------------------------------------------
consensus_4288#1 ACAGAAAGGAAGCATGGTGGTGGTCGTCGTGGCATGGATGGCGTCTAGTGTTAGTAGCAA 180
consensus_4288#0 ---------------------------------------------------AGCCTCTCT 9
consensus_4288#1 CTCTTCTCATTATTACTGTACTGGCCATCAGCTTTTGCTGCTAACGCTAATAGCCTCTCT 240
*********
consensus_4288#0 CATCTCAGTATATTCATCAGTAGAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTG 69
consensus_4288#1 CATCTCAGTATATTCATCAGTAAAAAGCAATGGACTGCTGCTTGTGCAGGTGAGGGAGTG 300
********************** *************************************
consensus_4288#0 AGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGA 129
consensus_4288#1 AGCGAGCACTATACTAGTAGTGGTAAGAGAAGAGAGAAATCTAAGAGAGAGAGAGAGAGA 360
************************************************************
consensus_4288#0 GAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATG 189
consensus_4288#1 GAGATGGATCATCACCAGCACCACGAGCAGCAGCAGCAGCGGATGGTGGAGATGCGGATG 420
************************************************************
consensus_4288#0 GGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCG 249
consensus_4288#1 GGGATGGCGATGGGCGAGGCGTACGTCGGGGGAGGAGAGGTGGTGGCGCGGGAGGCGGCG 480
************************************************************
consensus_4288#0 GCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGG 309
consensus_4288#1 GCGCAGGCGCTGGGGGCGGTGGTGCAGCTGCACTTCGACAAGACGCTGGAGAAGAAGCGG 540
************************************************************
consensus_4288#0 GCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTC 369
consensus_4288#1 GCGGCGGACGCGCAGAAGCAGGAGCTGTGGCGCCTCTTCCTCGCCTTCTTCCTCTTCCTC 600
************************************************************
consensus_4288#0 GCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTC 429
consensus_4288#1 GCCATCCTCCTCTCCGCCGTCGCCCAGTCCCCGCCGTCCCGCCTCCAGTGCCGCCACCTC 660
************************************************************
consensus_4288#0 TGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACAC 489
consensus_4288#1 TGGGCCCCCGCCGGCCTCCTCTCCCTCGCCCACCTCGCCTTCTACGCCGCCGTCGCACAC 720
************************************************************
consensus_4288#0 CACCTCCGATGCCTCAACGGATTCAGGT-------------------------------- 517
consensus_4288#1 CACCTCCGATGCCTCAACGGATTCAGGTCGCTCTAATTGCCTCTTGCTTAATTTGCTTGC 780
****************************
consensus_4288#0 ------------------------------------------------------------
consensus_4288#1 TACTACTTAATTACTTGCTTACTTACTTAGCAGCAATTAATGGCGCGCGAATGAATATAC 840
consensus_4288#0 -----ACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGAT 572
consensus_4288#1 TAGGTACCAGCGGCGTTGCCACAAGCTGACCCTGGCGCTGGCGGCGGACAGGCTGCGGAT 900
*******************************************************
consensus_4288#0 GCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCC 632
consensus_4288#1 GCTCAAGTCCGGCGGCGACGTGGTGGCGGCCGCCGACGTGGAGGTGCCGTACCAGGAGCC 960
************************************************************
consensus_4288#0 GCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCAT 692
consensus_4288#1 GCCCGAGAGCTACCTGGCCAAGTTCAAGCGCAGCTGGGCCATCCACTTCGCCTTCCTCAT 1020
************************************************************
consensus_4288#0 CACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGA 752
consensus_4288#1 CACCACCTTCGCCTTCTCCGTCGCCGCCGCCGTCGCCATCCTCTGCTTCTAGCTCTCAGA 1080
************************************************************
consensus_4288#0 TCTCCTCTCAACTGGACTACTCCTCCAATCCAATCTTACTAGTAGGAGATTTTGATTGAT 812
consensus_4288#1 TCTCCTCTCAAC------------------------------------------------ 1092
************
consensus_4288#0 CATCAGATCAGATGATGGAAGAGTCGTTCGTTGTTTATCTCTACTGTAATCCCTCCCTCT 872
consensus_4288#1 ------------------------------------------------------------
consensus_4288#0 CTTTCTCTTTCTTGTCGTATTCATTGTGATTTATTAGTAGAATGTTCTATGTTAATTGCC 932
consensus_4288#1 ------------------------------------------------------------
consensus_4288#0 CTTCAGCGAGAGGCCCTCACATGCATTATCTCAATTGTCAGCCAGTGTCACATTCACTCG 992
consensus_4288#1 ------------------------------------------------------------
consensus_4288#0 CTCAAATCGCGGCAGCAGCCAGCAGCCACTGTGGCAAAAGCAACTGTATTTATCCTTAAC 1052
consensus_4288#1 ------------------------------------------------------------
consensus_4288#0 TACAGTATCTAGTACTATGATCTCTCTTGGAGATTGGTTAGTTTGTGAGTAAAAGCTGCC 1112
consensus_4288#1 ------------------------------------------------------------
consensus_4288#0 AAGCT 1117
consensus_4288#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||