These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGCTAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCACTAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGCGCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCTGCCGGTGTCCATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCACCGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCCCGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG] [+] EMBL AK108811 [CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGCTAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCACTAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGCGCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCTGCCGGTGTCCATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCACCGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCCCGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG] consensusID : consensus_4300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [TTTTTTTTTACCATTCAAATCAATATACT-GGTTTA--TATTTATAGATGTCATCGATTAATGAATGAAATGTACTTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCAGGGGGTGAGAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCACGAGGCCCCGCCGGCGGCGCCGGCGTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCGTGCTGCGCGAGGCTTGCCGGTGTC] [-] EMBL BI813530 [TTTTTTTTTACCATTCAAATCAATATACT GGTTTA TATTTATAGATGTCATCGATTAATGAATGAAATGTACTTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCAGGGGGTGAGAATATCTGGAGAACAAGCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCCCGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCGGTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTCGTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGGCCCTCGCGACGCCCACGCTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCACGAGGCCCCGCCGGCGGCGCCGGCGTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGGAAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCGTGCTGCGCGAGGCTTGCCGGTGTC] [-] EMBL BI813551 [TTTTTTTTTACCATTCAAATCAATATACTGGGTTTAATTATTTTAAGATGTCATCGATTAATGAATGAAA GTA TTTATATATACATGTAGCTAGAATCATACATGGATATATATCTACAATTATATATGAGCA GGGGTGAG ATATCTGGAGAACAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4300#0 CATTAGCCAATTTCTCCCTAGCTCGTCCTGGTGGTACTGGTAGCGGCCGTTTTAGCTAGC 60 consensus_4300#1 ---TTTTTTTTTACCATTCAAATCAATATACTGGT--TTATATTTATAGATGTCATCGAT 55 * ** * * ** * **** * ** * * * consensus_4300#0 TAGTTGGATTCGTATATACTTTGATCCATCTCTACAGAGAATTGCGAAGATACCTGCCAC 120 consensus_4300#1 TAAT--GAATGAAATGTACTTT-----ATATATACATGTAGCTAGAATCATACATG--GA 106 ** * ** * ** ****** ** * **** * * * **** ** consensus_4300#0 TAGCAAGCTACGCTGAGTCGCTGATATACTGATTAGGGGGTGAAAATATCTGGAGAACAA 180 consensus_4300#1 TATATATCTACAATT--------ATATA-TGAGCAGGGGGTGAGAATATCTGGAGAACAA 157 ** * **** * ***** *** ********* **************** consensus_4300#0 GCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCC 240 consensus_4300#1 GCTTTAACTAATTCAGCTATGGTGAGCTCGAGCTTTCCTGCGGAGATCATCCACCCTGCC 217 ************************************************************ consensus_4300#0 CGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCG 300 consensus_4300#1 CGCCTGGGTTGCATGCTGAGGCTGCACGTGGTGGAGCATCCCACCGGCGACGCCGCCGCG 277 ************************************************************ consensus_4300#0 GTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTC 360 consensus_4300#1 GTCGCCTTCCAGTGCGACGGCTGCATGCTACCCGGAGAAGGCACGAGGTACACCTCCGTC 337 ************************************************************ consensus_4300#0 GTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTGCGCCCTCGCGACGCCCACG 420 consensus_4300#1 GTCGACAACCACCCGACACACCTCGCCCTCCACACGAGCTG-GCCCTCGCGACGCCCACG 396 ***************************************** ****************** consensus_4300#0 CTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGCCACGAGGCCCCCGCCGGCGGC 480 consensus_4300#1 CTGCAGCACGCGCTGGTGAAGGGCACGATGGAGCTCCGC-ACGAGGCCCC-GCCGGCGGC 454 *************************************** ********** ********* consensus_4300#0 GCCGGCGTTTGCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGG 540 consensus_4300#1 GCCGGCGTT-GCTCCGCCTGCTTCGAGACGGTGCGGGGATTCCACTACTACGGGTCGAGG 513 ********* ************************************************** consensus_4300#0 AAGACCGGCAAGGGCGAGCACCCGAAGCTGCACCCGTGCTGCGCGAGGCT-GCCGGTGTC 599 consensus_4300#1 AAGACCGGCAAGGGCGAGCACCCGAAGCTGCACC-GTGCTGCGCGAGGCTTGCCGGTGTC 572 ********************************** *************** ********* consensus_4300#0 CATCGCCGTGCGGGGCGGGCTCACCTTCGAGCTTCGCGCGGAGGTGTCGCACCGGTGCAC 659 consensus_4300#1 ------------------------------------------------------------ consensus_4300#0 CGGCTGCAGGGCGATGGAGTGGTACTACCGCCCTTGGTGCTACCGCTCCACTAATAGCCC 719 consensus_4300#1 ------------------------------------------------------------ consensus_4300#0 CGACCACCGCGTGTACCTGCACGTCAAGTGCATCAGGGAGATCATG 765 consensus_4300#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||