cluster # 4303

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Oryza sativa
cluster # 4303 cluster # 4303 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4303#0 length = 476 sequences # 2

consensus_4303#1 length = 272 sequences # 1

consensusID : consensus_4303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 476
fasta sequence

                              [AATTCCCAATTTCTTCGGTCGCGACGCCGACGCCGACGGGAAGCAAATCGATGGACGGCGGCGGCGGCATGTTGGGCGCCGTGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCCTCCTCTGGCGCCGCCGCTCCGATGCCGCCCACCGCCTCCCACCCCAGCCGCTCCAGGACGAACGTGTGCTCCGCGGCGGTCCCGCTCCCGGTCCGGCGGCGCGCCGCATGCGCCGGAGGCCGCTCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCGCGATGTCGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCAGAAATGAGGAGGAAGAAAGACNAAAAGCGTGAGGCACAA]

[+] EMBL CF322522             [AATTCCCAATTTCTTCGGTCGCGACGCCGACGCCGACGGGAAGCAAATCGATGGACGGCGGCGGCGGCATGTTGGGCGCCGTGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCCTCCTCTGGCGCCGCCGCTCCGATGCCGCCCACCGCCTCCCACCCCAGCCGCTCCAGGACGAACGTGTGCTCCGCGGCGGTCCCGCTCCCGGTCCGGCGGCGCG                                                                                                                                                                                                                                                             ]
[+] EMBL AU166433             [                                                   TGGACGGCGGCGGCGGCATGTTGGGCGCCGTGGTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCCTCCTCTGGCGCCGCCGCTCCGATGCCGCCCACCGCCTCCCACCCCAGCCGCTCCAGGACGAACGTGTGCTCCGCGGCGGTCCCGCTCCCGGTCCGGCGGCGCGCCGCATGCGCCGGAGGCCGCTCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCGCGATGTCGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAAAGGCAAGACCGAGAGGCCCAGCGTCAGGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTAAACAAGATCGCTATGCAGAAATGAGGAGGAAGAAAGACNAAAAGCGTGAGGCACAA]




>consensus_4303#0
AATTCCCAATTTCTTCGGTCGCGACGCCGACGCCGACGGGAAGCAAATCGATGGACGGCG
GCGGCGGCATGTTGGGCGCCGTGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCC
TCCTCTGGCGCCGCCGCTCCGATGCCGCCCACCGCCTCCCACCCCAGCCGCTCCAGGACG
AACGTGTGCTCCGCGGCGGTCCCGCTCCCGGTCCGGCGGCGCGCCGCATGCGCCGGAGGC
CGCTCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCGCGATGTCGACGACGCTGACA
GTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAAA
GGCAAGACCGAGAGGCCCAGCGTCAGGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACTA
AACAAGATCGCTATGCAGAAATGAGGAGGAAGAAAGACNAAAAGCGTGAGGCACAA

consensusID : consensus_4303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [GGACGGCGGCGGCGGCACTGTTGGGCGCTTNGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCCTCCTCTNGCGCCGCGCTCCGATGCCGTCCACCCTNCCACCCCAGCCGCTCCAGGACGAACGTGTGCTCCGCGGCGGTCCCGTCCCGGTCCGGCGGCGCGCAGTGNCNCGATGGCGCTGCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCNNATGGTCGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTC]

[+] EMBL C26630               [GGACGGCGGCGGCGGCACTGTTGGGCGCTTNGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTCCTCCTCTNGCGCCGCGCTCCGATGCCGTCCACCCTNCCACCCCAGCCGCTCCAGGACGAACGTGTGCTCCGCGGCGGTCCCGTCCCGGTCCGGCGGCGCGCAGTGNCNCGATGGCGCTGCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCNNATGGTCGACGACGCTGACAGTGACCTAGAGGAGGAGATCCAGGATGTC]




>consensus_4303#1
GGACGGCGGCGGCGGCACTGTTGGGCGCTTNGTTGTGCTTGCTGCTGGTCTTCGCCATCT
TCCCCCTCCTCCTCTNGCGCCGCGCTCCGATGCCGTCCACCCTNCCACCCCAGCCGCTCC
AGGACGAACGTGTGCTCCGCGGCGGTCCCGTCCCGGTCCGGCGGCGCGCAGTGNCNCGAT
GGCGCTGCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCNNATGGTCGACGACGCTG
ACAGTGACCTAGAGGAGGAGATCCAGGATGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4303#0      AATTCCCAATTTCTTCGGTCGCGACGCCGACGCCGACGGGAAGCAAATCGATGGACGGCG 60
consensus_4303#1      ----------------------------------------------------GGACGGCG 8
                                                                          ********

consensus_4303#0      GCGGCGGCA-TGTTGGGCGCCGTGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTC 119
consensus_4303#1      GCGGCGGCACTGTTGGGCGCTTNGTTGTGCTTGCTGCTGGTCTTCGCCATCTTCCCCCTC 68
                      ********* **********   *************************************

consensus_4303#0      CTCCTCTGGCGCCGCCGCTCCGATGCCGCCCACCGCCTCCCACCCCAGCCGCTCCAGGAC 179
consensus_4303#1      CTCCTCTNGCGCCGC-GCTCCGATGCCGTCCACC--CTNCCACCCCAGCCGCTCCAGGAC 125
                      ******* ******* ************ *****  ** *********************

consensus_4303#0      GAACGTGTGCTCCGCGGCGGTCCCGCTCCCGGTCCGGCGGCGCGCCGCATGCGCCGGAGG 239
consensus_4303#1      GAACGTGTGCTCCGCGGCGGTCCCG-TCCCGGTCCGGCGGCGCGCAG--TGNCNCGATGG 182
                      ************************* ******************* *  **   **  **

consensus_4303#0      CCGCTCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCGCGATGTCGACGACGCTGAC 299
consensus_4303#1      CGCTGCTCCACTTCGGCTGACGCTTCCACCAGCCGCGACCNNATGGTCGACGACGCTGAC 242
                      *    ***********************************     ***************

consensus_4303#0      AGTGACCTAGAGGAGGAGATCCAGGATGTCCCCAGGGGTTCCAAGAAGAAGGAGAAGAAA 359
consensus_4303#1      AGTGACCTAGAGGAGGAGATCCAGGATGTC------------------------------ 272
                      ******************************                              

consensus_4303#0      AGGCAAGACCGAGAGGCCCAGCGTCAGGCCGAAGAAGCAGCCCGGGATTCGAGGAGGACT 419
consensus_4303#1      ------------------------------------------------------------
                                                                                  

consensus_4303#0      AAACAAGATCGCTATGCAGAAATGAGGAGGAAGAAAGACNAAAAGCGTGAGGCACAA 476
consensus_4303#1      ---------------------------------------------------------