cluster # 4316

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Oryza sativa
cluster # 4316 cluster # 4316 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4316#0 length = 860 sequences # 2

consensus_4316#1 length = 742 sequences # 1

consensusID : consensus_4316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 860
fasta sequence

                              [TCGGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGCTTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGACTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGAGATTGGAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACCTGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGTTTGAGACAACCTGCTCCACTAGAAAATTTTGGTTGGCACCTCTTTCCTGAAACACAGAATGAAGATAAAGAACAAAGCCAGCAAGGTACAAACAATGTCAGCTCCAGTTTGATGGCGTTCCCTAAGATGGCAGGCATTTTCAACCGGAACATGTACAAATCTAGAAAGAAAGGAACCCCTCTGTATATTAGTGGAAAAAGAATGTTCACAGCACGTGAAATAAAAGTAATAACAAATAACAATTCAACAATTATTGGTAGAGGTGCATTTGGTAATGTCTACCTAGGAATTCTTGAGAATTATAGAAAGGTGGCAGTGAAGACATACATAAAAGGAACTGAACATGAAGAGGATCGATGTGGTAAAGAGCTGAACCTTCCCGAACTGATCCATAAGAACATNTATCCAACTGTTGGGTTTCTGCTGTAAGCTGGATGCTGTAATATTGGTTTATGAATTTGCTAACAAAGGGAGCCTCTACGACATACTCCATGGTACTAGCAATTTTCCTTTCCCACTAGATTTACGTCTAATATTGCTGTTGGGTCGGCAGAAGGACTGGCATATATGCACAGTAGATCCA]

[+] EMBL CF322850             [TCGGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGCTTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGACTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGAGATTGGAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACCTGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGTTTGAGACAACCTGCTCCACTAGAAAATTTTGGTTGGCACCTCTTTCCTGAAACACAGAATGAAGATAAAGAACAAAGCCAGCAAGGTACAAACAATGTCAGCTCCAGTTTGATGGCGTTCCCTAAGATGGCAGGCATTTTCAACCGGAACATGTACAAATCTAGAAAGAAAGGAACCCCTCTGTATATTAGTGGAAAAAGAATGTTCACAGCACGTGAAATAAAAGTAATAACAAATAACAATTCAACAATTATTGGTAGAGGTGCATTTGGTAATGTCTACCTAGG                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF322630             [                                                                                                                                                                                                                                                                                                                                                                                      TCAGCTCCAGTTTGATGGCGTTCCCTAAGATGGCAGGCATTTTCAACCGGAACATGTACAAATCTAGAAAGAAAGGAACCCCTCTGTATATTAGTGGAAAAAGAATGTTCACAGCACGTGAAATAAAAGTAATAACAAATAACAATTCAACAATTATTGGTAGAGGTGCATTTGGTAATGTCTACCTAGGAATTCTTGAGAATTATAGAAAGGTGGCAGTGAAGACATACATAAAAGGAACTGAACATGAAGAGGATCGATGTGGTAAAGAGCTGAACCTTCCCGAACTGATCCATAAGAACATNTATCCAACTGTTGGGTTTCTGCTGTAAGCTGGATGCTGTAATATTGGTTTATGAATTTGCTAACAAAGGGAGCCTCTACGACATACTCCATGGTACTAGCAATTTTCCTTTCCCACTAGATTTACGTCTAATATTGCTGTTGGGTCGGCAGAAGGACTGGCATATATGCACAGTAGATCCA]




>consensus_4316#0
TCGGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGA
GCTTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGT
GACTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGAGAT
TGGAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGA
CCTGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGTTTGAGACAACCTGCTCCACTAGA
AAATTTTGGTTGGCACCTCTTTCCTGAAACACAGAATGAAGATAAAGAACAAAGCCAGCA
AGGTACAAACAATGTCAGCTCCAGTTTGATGGCGTTCCCTAAGATGGCAGGCATTTTCAA
CCGGAACATGTACAAATCTAGAAAGAAAGGAACCCCTCTGTATATTAGTGGAAAAAGAAT
GTTCACAGCACGTGAAATAAAAGTAATAACAAATAACAATTCAACAATTATTGGTAGAGG
TGCATTTGGTAATGTCTACCTAGGAATTCTTGAGAATTATAGAAAGGTGGCAGTGAAGAC
ATACATAAAAGGAACTGAACATGAAGAGGATCGATGTGGTAAAGAGCTGAACCTTCCCGA
ACTGATCCATAAGAACATNTATCCAACTGTTGGGTTTCTGCTGTAAGCTGGATGCTGTAA
TATTGGTTTATGAATTTGCTAACAAAGGGAGCCTCTACGACATACTCCATGGTACTAGCA
ATTTTCCTTTCCCACTAGATTTACGTCTAATATTGCTGTTGGGTCGGCAGAAGGACTGGC
ATATATGCACAGTAGATCCA

consensusID : consensus_4316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [GCCTTGATTCATTGGACATAAGATTGGATATTGCTATAGAGTGTGCAGATGCTCTAGGGTATTTACATTCTATGTGCAGCCCTGTTCTACATGGTGATGTAAAGCCTTCCAATATTCTGCTGGATGACAATTTTAATGCAAAAATAACAGATTTTGGAATATCGAGACTTCTCTCGACAGACAAAACTCATACTGTTAAGTGTATAGGGAGTATAGGTTACGTGGATCCCCTGTATTGTCGGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGCTTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGACTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGTGATTGGAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACCTGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGCTTGAGACAACCTGCTCCACTAGAAAATTTTGGTTGGCACCTCTTTCCTCAAATCCCAGCTAGCGGCGGCCTGACCGTGAGACGCGACCGCTCCCAACGAGGCGACGACGGAGGATACTGCCGCCGACCTCACTCGCGCCACCGCTTGCGTTACAACAGCTCGCTCCGCCGCCGCTCGCGTCTCATCACCAGCTTTTCCATCGGCCCGCCGGCTGCCGCTGGGTTGGT]

[-] EMBL AK111067             [GCCTTGATTCATTGGACATAAGATTGGATATTGCTATAGAGTGTGCAGATGCTCTAGGGTATTTACATTCTATGTGCAGCCCTGTTCTACATGGTGATGTAAAGCCTTCCAATATTCTGCTGGATGACAATTTTAATGCAAAAATAACAGATTTTGGAATATCGAGACTTCTCTCGACAGACAAAACTCATACTGTTAAGTGTATAGGGAGTATAGGTTACGTGGATCCCCTGTATTGTCGGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGCTTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGACTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGTGATTGGAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACCTGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGCTTGAGACAACCTGCTCCACTAGAAAATTTTGGTTGGCACCTCTTTCCTCAAATCCCAGCTAGCGGCGGCCTGACCGTGAGACGCGACCGCTCCCAACGAGGCGACGACGGAGGATACTGCCGCCGACCTCACTCGCGCCACCGCTTGCGTTACAACAGCTCGCTCCGCCGCCGCTCGCGTCTCATCACCAGCTTTTCCATCGGCCCGCCGGCTGCCGCTGGGTTGGT]




>consensus_4316#1
GCCTTGATTCATTGGACATAAGATTGGATATTGCTATAGAGTGTGCAGATGCTCTAGGGT
ATTTACATTCTATGTGCAGCCCTGTTCTACATGGTGATGTAAAGCCTTCCAATATTCTGC
TGGATGACAATTTTAATGCAAAAATAACAGATTTTGGAATATCGAGACTTCTCTCGACAG
ACAAAACTCATACTGTTAAGTGTATAGGGAGTATAGGTTACGTGGATCCCCTGTATTGTC
GGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGC
TTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGA
CTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGTGATTG
GAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACC
TGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGCTTGAGACAACCTGCTCCACTAGAAA
ATTTTGGTTGGCACCTCTTTCCTCAAATCCCAGCTAGCGGCGGCCTGACCGTGAGACGCG
ACCGCTCCCAACGAGGCGACGACGGAGGATACTGCCGCCGACCTCACTCGCGCCACCGCT
TGCGTTACAACAGCTCGCTCCGCCGCCGCTCGCGTCTCATCACCAGCTTTTCCATCGGCC
CGCCGGCTGCCGCTGGGTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4316#0      ------------------------------------------------------------
consensus_4316#1      GCCTTGATTCATTGGACATAAGATTGGATATTGCTATAGAGTGTGCAGATGCTCTAGGGT 60
                                                                                  

consensus_4316#0      ------------------------------------------------------------
consensus_4316#1      ATTTACATTCTATGTGCAGCCCTGTTCTACATGGTGATGTAAAGCCTTCCAATATTCTGC 120
                                                                                  

consensus_4316#0      ------------------------------------------------------------
consensus_4316#1      TGGATGACAATTTTAATGCAAAAATAACAGATTTTGGAATATCGAGACTTCTCTCGACAG 180
                                                                                  

consensus_4316#0      ----------------------------------------------------------TC 2
consensus_4316#1      ACAAAACTCATACTGTTAAGTGTATAGGGAGTATAGGTTACGTGGATCCCCTGTATTGTC 240
                                                                                **

consensus_4316#0      GGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGC 62
consensus_4316#1      GGGAGGGACGTCTCACCTCCAAAAGTGATGTTTATAGTTTTGGAATAGTTCTTCAGGAGC 300
                      ************************************************************

consensus_4316#0      TTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGA 122
consensus_4316#1      TTATCACCAAGAAAAAGGCGGCAAGTCTGGCTCAAGCTCTTGCTGAAGGAAAGGGGGTGA 360
                      ************************************************************

consensus_4316#0      CTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGAGATTG 182
consensus_4316#1      CTGAATTGCTTGATCCCAAAATTTGCAATGAGAGCAACATGAAGGTTTTAGTGGTGATTG 420
                      ****************************************************** *****

consensus_4316#0      GAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACC 242
consensus_4316#1      GAAAATTACTACAGGAATGCCTAACAGAGGACATTCATAGACGTCCGGATATGTGCGACC 480
                      ************************************************************

consensus_4316#0      TGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGTTTGAGACAACCTGCTCCACTAGAAA 302
consensus_4316#1      TGGCTGGGCACCTTCGGATGCTTAGGAAATTCTGCTTGAGACAACCTGCTCCACTAGAAA 540
                      ********************************** *************************

consensus_4316#0      ATTTTGGTTGGCACCTCTTTCCTGAAACACAGAATGAAGATAAAGAACAAAGCCAGCAAG 362
consensus_4316#1      ATTTTGGTTGGCACCTCTTTCCTCAAATCCCAGCTAGCGGCGG----CCTGACC-GTGAG 595
                      *********************** ***  *    *   *        *    ** *  **

consensus_4316#0      GTACAAACAATGTCAGCTCCAGTTTGATGGCGTTCCCTAAGATGGCAGGCATTTTCAACC 422
consensus_4316#1      ACGCGACCGCTCCCAACGAGGCGACGACGGAGGATACTGCCGCCGACCTCACTCGCG-CC 654
                         * * *  *  ** *        ** ** *    **      *    ** *  *  **

consensus_4316#0      GGAACATGTACAAATCTAGAAAGAAAGGAACCCCTCTGTATATTAGTGGAAAAAGAATGT 482
consensus_4316#1      ACCGCTTGCGTTACAACAGCTCGCTCCGCCGCCGCTCGCGTCTCATC---ACCAGCTTTT 711
                          * **    *    **   *    *   **    *  * * *     *  **  * *

consensus_4316#0      TCA-CAGCACGTGAAATAAAAGTAATAACAAATAACAATTCAACAATTATTGGTAGAGGT 541
consensus_4316#1      CCATCGGCCCGCCGGCTGCCGCTGG--GTTGGT--------------------------- 742
                       ** * ** **     *     *         *                           

consensus_4316#0      GCATTTGGTAATGTCTACCTAGGAATTCTTGAGAATTATAGAAAGGTGGCAGTGAAGACA 601
consensus_4316#1      ------------------------------------------------------------
                                                                                  

consensus_4316#0      TACATAAAAGGAACTGAACATGAAGAGGATCGATGTGGTAAAGAGCTGAACCTTCCCGAA 661
consensus_4316#1      ------------------------------------------------------------
                                                                                  

consensus_4316#0      CTGATCCATAAGAACATNTATCCAACTGTTGGGTTTCTGCTGTAAGCTGGATGCTGTAAT 721
consensus_4316#1      ------------------------------------------------------------
                                                                                  

consensus_4316#0      ATTGGTTTATGAATTTGCTAACAAAGGGAGCCTCTACGACATACTCCATGGTACTAGCAA 781
consensus_4316#1      ------------------------------------------------------------
                                                                                  

consensus_4316#0      TTTTCCTTTCCCACTAGATTTACGTCTAATATTGCTGTTGGGTCGGCAGAAGGACTGGCA 841
consensus_4316#1      ------------------------------------------------------------
                                                                                  

consensus_4316#0      TATATGCACAGTAGATCCA 860
consensus_4316#1      -------------------