cluster # 4319

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Oryza sativa
cluster # 4319 cluster # 4319 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4319#0 length = 608 sequences # 1

consensus_4319#1 length = 608 sequences # 1
consensus_4319#2 length = 517 sequences # 1

consensusID : consensus_4319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [ATCTTAAGTTCAAATAACTTTGAAACATGCAAATTTTTGTCAAAACACTCACAGGCAAAACCATTACTCTCGAAGTCGAACCATCGGATACTATCGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCCGGCAAACAATTAGAAGATGGTCGAACATTATCCGACTACNACATTCAAAAGGAATCAACACTCCATTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAAACACTCACAGGAAAAACAATCACCCTCGAAGTTGAACCATCTGATACAATTGAAAACGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGAACATTATCCGACTACNATATCCNAAAAGAATCGACACTCCATTTGGTCCTTCGTCTTCGTGGTGGTATGCANATCTTCGTCAAGACTCTTACTGGCAAAACAATTACTCTTGAAGTCGAACCAAGCGATACAATCGAANACGTTAAAGCTAANATTCAAGACNAGGAAGGTATTCCACCAGATCAACAACGA]

[+] EMBL CA754788             [ATCTTAAGTTCAAATAACTTTGAAACATGCAAATTTTTGTCAAAACACTCACAGGCAAAACCATTACTCTCGAAGTCGAACCATCGGATACTATCGAGAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCCGGCAAACAATTAGAAGATGGTCGAACATTATCCGACTACNACATTCAAAAGGAATCAACACTCCATTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAAACACTCACAGGAAAAACAATCACCCTCGAAGTTGAACCATCTGATACAATTGAAAACGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGAACATTATCCGACTACNATATCCNAAAAGAATCGACACTCCATTTGGTCCTTCGTCTTCGTGGTGGTATGCANATCTTCGTCAAGACTCTTACTGGCAAAACAATTACTCTTGAAGTCGAACCAAGCGATACAATCGAANACGTTAAAGCTAANATTCAAGACNAGGAAGGTATTCCACCAGATCAACAACGA]




>consensus_4319#0
ATCTTAAGTTCAAATAACTTTGAAACATGCAAATTTTTGTCAAAACACTCACAGGCAAAA
CCATTACTCTCGAAGTCGAACCATCGGATACTATCGAGAATGTAAAAGCCAAAATTCAAG
ATAAAGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCCGGCAAACAATTAGAAG
ATGGTCGAACATTATCCGACTACNACATTCAAAAGGAATCAACACTCCATTTGGTCCTTC
GTCTCCGTGGTGGTATGCAAATCTTCGTCAAAACACTCACAGGAAAAACAATCACCCTCG
AAGTTGAACCATCTGATACAATTGAAAACGTTAAAGCTAAAATCCAAGACAAGGAAGGTA
TTCCACCAGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGAACAT
TATCCGACTACNATATCCNAAAAGAATCGACACTCCATTTGGTCCTTCGTCTTCGTGGTG
GTATGCANATCTTCGTCAAGACTCTTACTGGCAAAACAATTACTCTTGAAGTCGAACCAA
GCGATACAATCGAANACGTTAAAGCTAANATTCAAGACNAGGAAGGTATTCCACCAGATC
AACAACGA

consensusID : consensus_4319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [AAACAACATGCAAATCTTCGTAAAAACGCTCACAGGCAAAACAATTACTCTCGAGGTCGAACCTTCGGATACAATTGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATTCCACCCGATCAACAACGCTTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGCACACTTTCGGATTACAACATTCAAAAGGAATCGACACTTCACTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACCCTCACCGGAAAAACAATCACTCTCGAAGTTGAACCATCAGACACAATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGTACATTGTCCGACTATAACATCCAAAAAGAATCAACACTTCACTTGGTCCTTCGTCTTCGTGGTGGTATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACAATTACCCTCGAAGGTGAACCAAGCGATACGATCGAAAACGTTAAGGCCAAAATTCAAGACNAGGAAGGTATTCCACCCGATCCACAACGTTTGATCTTCCGCTTGGCAA]

[+] EMBL CA755567             [AAACAACATGCAAATCTTCGTAAAAACGCTCACAGGCAAAACAATTACTCTCGAGGTCGAACCTTCGGATACAATTGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATTCCACCCGATCAACAACGCTTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGCACACTTTCGGATTACAACATTCAAAAGGAATCGACACTTCACTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACCCTCACCGGAAAAACAATCACTCTCGAAGTTGAACCATCAGACACAATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGTACATTGTCCGACTATAACATCCAAAAAGAATCAACACTTCACTTGGTCCTTCGTCTTCGTGGTGGTATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACAATTACCCTCGAAGGTGAACCAAGCGATACGATCGAAAACGTTAAGGCCAAAATTCAAGACNAGGAAGGTATTCCACCCGATCCACAACGTTTGATCTTCCGCTTGGCAA]




>consensus_4319#1
AAACAACATGCAAATCTTCGTAAAAACGCTCACAGGCAAAACAATTACTCTCGAGGTCGA
ACCTTCGGATACAATTGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGTATTCCACC
CGATCAACAACGCTTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGCACACTTTCGGA
TTACAACATTCAAAAGGAATCGACACTTCACTTGGTCCTTCGTCTCCGTGGTGGTATGCA
AATCTTCGTCAAGACCCTCACCGGAAAAACAATCACTCTCGAAGTTGAACCATCAGACAC
AATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACG
TTTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGTACATTGTCCGACTATAACATCCA
AAAAGAATCAACACTTCACTTGGTCCTTCGTCTTCGTGGTGGTATGCAAATTTTCGTTAA
AACCTTAACTGGTAAAACAATTACCCTCGAAGGTGAACCAAGCGATACGATCGAAAACGT
TAAGGCCAAAATTCAAGACNAGGAAGGTATTCCACCCGATCCACAACGTTTGATCTTCCG
CTTGGCAA

consensusID : consensus_4319#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [AGATCTTCGTTAAGACTCTTACGGGTAAAACAATCACACTCGAAGTCGAACCATCCGACACGATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACCTTATCCGATTACAACATCCAAAAAGAAAGTACACTTCATTTAGTTTTACGTCTTCGTGGTGGTACAATTGAACCAACACTTCGTATGTTAGCTCAAAAATACAATTGCGACAAAGTTATCTGCCGAAAATGCTATGCACGTCTTCATCCACGTGCTGTCAATTGCCGTAAACGTAAATGTGGTCACACAAGCAATTTACGTCCAAAAAAGAAACTCAAATAAACGATTTATCTTTTATTTTCGTTTTTTTTTGTTTTGTTCATGTCTAAACATGTTAAGAAAACGAAAGGAAAAAAATATTTAACATCAGAATAAAATAACGAAGAGAAGAACAATAAAATTCACTTGAAAAAAAA]

[+] EMBL CA755633             [AGATCTTCGTTAAGACTCTTACGGGTAAAACAATCACACTCGAAGTCGAACCATCCGACACGATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACCTTATCCGATTACAACATCCAAAAAGAAAGTACACTTCATTTAGTTTTACGTCTTCGTGGTGGTACAATTGAACCAACACTTCGTATGTTAGCTCAAAAATACAATTGCGACAAAGTTATCTGCCGAAAATGCTATGCACGTCTTCATCCACGTGCTGTCAATTGCCGTAAACGTAAATGTGGTCACACAAGCAATTTACGTCCAAAAAAGAAACTCAAATAAACGATTTATCTTTTATTTTCGTTTTTTTTTGTTTTGTTCATGTCTAAACATGTTAAGAAAACGAAAGGAAAAAAATATTTAACATCAGAATAAAATAACGAAGAGAAGAACAATAAAATTCACTTGAAAAAAAA]




>consensus_4319#2
AGATCTTCGTTAAGACTCTTACGGGTAAAACAATCACACTCGAAGTCGAACCATCCGACA
CGATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAAC
GTTTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACCTTATCCGATTACAACATCC
AAAAAGAAAGTACACTTCATTTAGTTTTACGTCTTCGTGGTGGTACAATTGAACCAACAC
TTCGTATGTTAGCTCAAAAATACAATTGCGACAAAGTTATCTGCCGAAAATGCTATGCAC
GTCTTCATCCACGTGCTGTCAATTGCCGTAAACGTAAATGTGGTCACACAAGCAATTTAC
GTCCAAAAAAGAAACTCAAATAAACGATTTATCTTTTATTTTCGTTTTTTTTTGTTTTGT
TCATGTCTAAACATGTTAAGAAAACGAAAGGAAAAAAATATTTAACATCAGAATAAAATA
ACGAAGAGAAGAACAATAAAATTCACTTGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4319#0      ATCTTAAGTTCAAATAACTTTGAAACATGCAAATTTTTGTCAAAACACTCACAGGCAAAA 60
consensus_4319#1      -------------------AAACAACATGCAAATCTTCGTAAAAACGCTCACAGGCAAAA 41
consensus_4319#2      ------------------------------AGATCTTCGTTAAGACTCTTACGGGTAAAA 30
                                                    * ** ** ** ** ** ** ** ** ****

consensus_4319#0      CCATTACTCTCGAAGTCGAACCATCGGATACTATCGAGAATGTAAAAGCCAAAATTCAAG 120
consensus_4319#1      CAATTACTCTCGAGGTCGAACCTTCGGATACAATTGAAAATGTAAAAGCAAAAATCCAAG 101
consensus_4319#2      CAATCACACTCGAAGTCGAACCATCCGACACGATCGAAAATGTCAAGGCTAAAATCCAAG 90
                      * ** ** ***** ******** ** ** ** ** ** ***** ** ** ***** ****

consensus_4319#0      ATAAAGAAGGTATTCCACCAGATCAACAACGATTGATCTTTGCCGGCAAACAATTAGAAG 180
consensus_4319#1      ATAAAGAAGGTATTCCACCCGATCAACAACGCTTGATCTTTGCTGGTAAACAGTTGGAAG 161
consensus_4319#2      ACAAAGAAGGTATTCCACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAACTTGAAG 150
                      * ***************** *********** *********** ** *****  * ****

consensus_4319#0      ATGGTCGAACATTATCCGACTACNACATTCAAAAGGAATCAACACTCCATTTGGTCCTTC 240
consensus_4319#1      ATGGTCGCACACTTTCGGATTACAACATTCAAAAGGAATCGACACTTCACTTGGTCCTTC 221
consensus_4319#2      ATGGACGTACCTTATCCGATTACAACATCCAAAAAGAAAGTACACTTCATTTAGTTTTAC 210
                      **** ** **  * ** ** *** **** ***** ***   ***** ** ** **  * *

consensus_4319#0      GTCTCCGTGGTGGTATGCAAATCTTCGTCAAAACACTCACAGGAAAAACAATCACCCTCG 300
consensus_4319#1      GTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACCCTCACCGGAAAAACAATCACTCTCG 281
consensus_4319#2      GTCTTCGTGGTGGTA--CAATT-----------------------GAACCAACACTTCGT 245
                      **** **********  *** *                        *** * ***     

consensus_4319#0      AAGTTGAACCATCTGATACAATTGAAAACGTTAAAGCTAAAATCCAAGACAAGGAAGGTA 360
consensus_4319#1      AAGTTGAACCATCAGACACAATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTA 341
consensus_4319#2      ATGTTAGCTCAA-AAATACAATTG----CGACAAAGTTA---TCT--GCCGAAAATGCTA 295
                      * ***    **    * *******    **  ****  *   *    * * *  * * **

consensus_4319#0      TTCCACCAGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGAACAT 420
consensus_4319#1      TTCCACCCGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGTCGTACAT 401
consensus_4319#2      TGC-ACGTCTTCATCCACGTGCTGTCAATTGCCGTAAACGT---AAATGTGGTCACACA- 350
                      * * **    *** * ***     **  *    * ****      **  *****  *** 

consensus_4319#0      TATCCGACTACNATATCCNAAAAGAATCGACACTCCATTTGGTCCTTCGTCTTCGTGGTG 480
consensus_4319#1      TGTCCGACTATAACATCCAAAAAGAATCAACACTTCACTTGGTCCTTCGTCTTCGTGGTG 461
consensus_4319#2      -AGCAATTTACGTCCAAAAAAGAAACTCAAATAAACGATTTATCTTTTATTTTCGTTTTT 409
                         *    **         ** * * ** *     *  **  ** **  * *****  * 

consensus_4319#0      GTATGCANATCTTCGTCAAGACTCTTACTGGCAAAACAATTACTCTTGAAGTCGAACCAA 540
consensus_4319#1      GTATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACAATTACCCTCGAAGGTGAACCAA 521
consensus_4319#2      TTTTG-----TTTTGTTCATGTCTAAACATGTTAAGAAAA------CGAAAGGAAAAAAA 458
                       * **      ** **  *       **  *  **  **        ***    **  **

consensus_4319#0      GCGATACAATCGAANACGTTAAAGCTAANATTCAAGACNAGGAAGGTATTCCACCAGATC 600
consensus_4319#1      GCGATACGATCGAAAACGTTAAGGCCAAAATTCAAGACNAGGAAGGTATTCCACCCGATC 581
consensus_4319#2      TATTTAACATCAGAA----TAAAATAACGA--AGAGAAGAACAATAAAATTCACTTGAAA 512
                          **  ***  *     ***    *  *    ***  *  **   * * ***  **  

consensus_4319#0      AACAACGA------------------- 608
consensus_4319#1      CACAACGTTTGATCTTCCGCTTGGCAA 608
consensus_4319#2      AAAAA---------------------- 517
                       * **