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Oryza sativa
cluster # 432 cluster # 432       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_432#0 length = 1109 sequences # 1  
consensus_432#1 length = 692 sequences # 1  

consensusID : consensus_432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1109
fasta sequence
                              [ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA]

[+] EMBL AK111570             [ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA]


>consensus_432#0 ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAG ACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCA AGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTAC TAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTG TGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTG AATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAG GCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCAC AAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGG GTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGA TCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAG TTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCAT ATAATGATTTAATTTATTCCATAAATAAA



consensusID : consensus_432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA]

[-] EMBL CA759698             [GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA]


>consensus_432#1 GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATG AATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACC AGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAA ATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTAT TCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAA CCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTT CCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAA TGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAG AAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGC TTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTT GAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATT TGATCTCAAGTATTTCATACAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_432#0      ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAG 60
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      ACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCA 120
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      AGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTAC 180
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      TAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTG 240
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      TGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTG 300
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      AATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAG 360
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      GCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCAC 420
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      AAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGG 480
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      GTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGA 540
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      TCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAG 600
consensus_432#1      ------------------------------------------------------------
                                                                                 

consensus_432#0      TTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 660
consensus_432#1      -------------GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 47
                                  ***********************************************

consensus_432#0      GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 720
consensus_432#1      GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 107
                     ************************************************************

consensus_432#0      AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 780
consensus_432#1      AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 167
                     ************************************************************

consensus_432#0      GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 840
consensus_432#1      GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 227
                     ************************************************************

consensus_432#0      CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 900
consensus_432#1      CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 287
                     ************************************************************

consensus_432#0      GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 960
consensus_432#1      GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 347
                     ************************************************************

consensus_432#0      TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 1020
consensus_432#1      TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 407
                     ************************************************************

consensus_432#0      TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCAC---TGTTGAGATTATGGG 1077
consensus_432#1      TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGT 467
                     ******************************************   ***  **   *  * 

consensus_432#0      -------CATATAATGATTTAATTTATTCCATAAATAAA--------------------- 1109
consensus_432#1      AAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGG 527
                            ** *  *     *  **    *  *   * *                      

consensus_432#0      ------------------------------------------------------------
consensus_432#1      TGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAG 587
                                                                                 

consensus_432#0      ------------------------------------------------------------
consensus_432#1      GGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTG 647
                                                                                 

consensus_432#0      ---------------------------------------------
consensus_432#1      TATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA 692
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)