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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1109 fasta sequence
[ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA]
[+] EMBL AK111570 [ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAGACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCAAGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTACTAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTGTGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTGAATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAGGCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCACAAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGGGTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGATCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAGTTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACTGTTGAGATTATGGGCATATAATGATTTAATTTATTCCATAAATAAA]
consensusID : consensus_432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA]
[-] EMBL CA759698 [GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTGGCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGTAAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTGTATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_432#0 ACAGATACAGAAGCAGGCGCTGCTGCTAGAGGCGAAGGATATAACAAGCGGCGGCCGGAG 60
consensus_432#1 ------------------------------------------------------------
consensus_432#0 ACGACGACGGAGAAATCCGGAAGAAGAGGAACTGCCGGCGCTGAGCTGCAATCGCGCCCA 120
consensus_432#1 ------------------------------------------------------------
consensus_432#0 AGAATCCATCTCCTCCGGCGGCAGCTTACAGGGTCGCTGCTCCATCTCCTTGAATTGTAC 180
consensus_432#1 ------------------------------------------------------------
consensus_432#0 TAGCTGTCTTGTGCTTAAGATTTGCGCTCGGCTTCATTTTTGGATTCAAGCTGCTGGGTG 240
consensus_432#1 ------------------------------------------------------------
consensus_432#0 TGGATTTTTATGATGGGCTGTCTACCAACAAAGCAAGTGGGTCGTTCAACACATTCCTTG 300
consensus_432#1 ------------------------------------------------------------
consensus_432#0 AATCCACGGGAAGCTGTGGCTCTTGCGGCTGAAACATCTTTTACTGTGAATGAAGTTGAG 360
consensus_432#1 ------------------------------------------------------------
consensus_432#0 GCATTATACGATCTCTTCAGGAAATTAAGTAATTCAATAATTAAAGATGGTCTGATTCAC 420
consensus_432#1 ------------------------------------------------------------
consensus_432#0 AAGGAAGAATTCCATCTTGCTCTCTTTAGGAACAAGAAGACAAATCTCTTCGTTGATAGG 480
consensus_432#1 ------------------------------------------------------------
consensus_432#0 GTCTTTGATTTGTTTGATCAAAAAGGAAATGGTGTCATCGAATTTGATGAATTTGTTCGA 540
consensus_432#1 ------------------------------------------------------------
consensus_432#0 TCTCTTAGTGTGTTTCATCCAGATGCACCTGAGGAACAGAAAGCTGGATTTGCATTTAAG 600
consensus_432#1 ------------------------------------------------------------
consensus_432#0 TTATATGACCTAAGACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 660
consensus_432#1 -------------GACAGACAGGGTTTATTGAAAGGCATGAGTTAAAGGAGATGGTGTTG 47
***********************************************
consensus_432#0 GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 720
consensus_432#1 GCTCTTCTGGATGAATCAGATTTGAATATTACAAGTGATGCTGTCGAGATGATTGTTGAT 107
************************************************************
consensus_432#0 AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 780
consensus_432#1 AGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAAT 167
************************************************************
consensus_432#0 GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 840
consensus_432#1 GAGTTTGTCAAAAATAATCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGAC 227
************************************************************
consensus_432#0 CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 900
consensus_432#1 CTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAGAAGTCAGCGAAGCAGACATGGTT 287
************************************************************
consensus_432#0 GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 960
consensus_432#1 GCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTAGCA 347
************************************************************
consensus_432#0 TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 1020
consensus_432#1 TGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGT 407
************************************************************
consensus_432#0 TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCAC---TGTTGAGATTATGGG 1077
consensus_432#1 TGATGCCTCAAAATGTAGCATCACTGACCAGCAGATGCTCACACCTGTACAGCACACAGT 467
****************************************** *** ** * *
consensus_432#0 -------CATATAATGATTTAATTTATTCCATAAATAAA--------------------- 1109
consensus_432#1 AAGCTTTCACAAGAAAGCCTTTTTCCCCCTTTGTGTTAGATATAGTACAGCCATGGAAGG 527
** * * * ** * * * *
consensus_432#0 ------------------------------------------------------------
consensus_432#1 TGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGTGAG 587
consensus_432#0 ------------------------------------------------------------
consensus_432#1 GGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGGCTTAGATATTG 647
consensus_432#0 ---------------------------------------------
consensus_432#1 TATTTCATCAATTTGATCTCAAGTATTTCATACAAAAAAAAAAAA 692
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||