cluster # 4322

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Oryza sativa
cluster # 4322 cluster # 4322 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4322#0 length = 643 sequences # 1

consensus_4322#1 length = 537 sequences # 1
consensus_4322#2 length = 271 sequences # 1

consensusID : consensus_4322#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGTTCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCTTCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCCCCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA]

[+] EMBL BI801072             [ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGTTCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCTTCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCCCCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA]




>consensus_4322#0
ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGT
TCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCT
TCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTC
GCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCAT
CGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGG
CTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGC
CCTCGCCTGGAGCTTCTCGATGTGTCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCC
AGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATG
ATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGA
TCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCCC
CTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA

consensusID : consensus_4322#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [AGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC]

[+] EMBL CF322704             [AGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC]




>consensus_4322#1
AGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTC
CACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAG
CAGCGGCGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCG
CCACCTGCGGCGGCTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCAT
CGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGT
CGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCC
CAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCC
GTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAA
CTACAGTCGATCACCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC

consensusID : consensus_4322#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [AGAGGACGAGACAAGGGGGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA]

[-] EMBL CA760682             [AGAGGACGAGACAAGGGGGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA]




>consensus_4322#2
AGAGGACGAGACAAGGGGGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGT
GCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGATGATTACTACGATTACT
ACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGA
CTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCACCTTAATTTGGTTGAA
TCATATCTTATTTCTTCTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4322#0      ACCTGATGTGCCCCCATGCGGAAGTCCCGTCGACCGGCTCCGGCGGCCCGGCTCGAGTGT 60
consensus_4322#1      ------------------------------------------------------------
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      TCAAGGGGGAGGATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACACGGTCGCCT 120
consensus_4322#1      ----------------------------------------------AGACA-GGTCGCCT 13
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      TCTATGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTC 180
consensus_4322#1      TCTCTGAAGGTTATTTCCGTTTGGTGCTCCGACGAAACCAGGATGTCCACGGAAGGATTC 73
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      GCCAAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCGGCGGCGGCCAT 240
consensus_4322#1      GCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGGCGGCCAT 133
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      CGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGG 300
consensus_4322#1      CGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGG 193
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      CTCACTCTCCAGGGCATCGGAGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGC 360
consensus_4322#1      CTCACTGTCCAGGGCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGC 253
consensus_4322#2      ------------------------------------------------------------
                                                                                  

consensus_4322#0      CCTCGCCTGGAGCTTCTCGATGTGT-CAGCTGCTGGGATTTGTGTGTCGACGACGACGCC 419
consensus_4322#1      CCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGCTGGGATTTGTGTGTCGACGACGACGCC 313
consensus_4322#2      --------------AGAGGACGAGACAAGGGG--GGGATTTGTGTGTCGACGACGACGCC 44
                                        ** * *   **  *  **************************

consensus_4322#0      CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 479
consensus_4322#1      CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 373
consensus_4322#2      CAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGAAGAGGAT 104
                      ************************************************************

consensus_4322#0      GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 539
consensus_4322#1      GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 433
consensus_4322#2      GATTACTACGATTACTACTACTATTATAATTAACCAAGTCTACGGCCGTTATGCTGATCG 164
                      ************************************************************

consensus_4322#0      ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACCGTCGATCC 599
consensus_4322#1      ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCA 493
consensus_4322#2      ATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGGTAACTACAGTCGATCA 224
                      *************************************************** ******* 

consensus_4322#0      CCTTAATTTGGTTGAATCATATCTTATTTCTGTTAAAAAAAAAA--- 643
consensus_4322#1      CCTTAATTTGGGTGAATCATATCTTATTTCTTCTATCAGTCTAC--- 537
consensus_4322#2      CCTTAATTTGGTTGAATCATATCTTATTTCTTCTAAAAAAAAAAAAA 271
                      *********** *******************  **  *    *