These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence [TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAAGGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAATGCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATTAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGT] [+] EMBL AK062956 [TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAAGGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAATGCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATTAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGT] consensusID : consensus_4323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [TTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATGAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTTCAA] [-] EMBL CB632419 [TTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATGAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTTCAA] consensusID : consensus_4323#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [ATTGTCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAGCATGAAAACATTGTTCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCTTGAACTAGTAACTCAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGTCTCAGCGTACACAAGGCAGATTTTGATAGGTTTGAACTATCTACACCAGCGGAACGTGTTACACAGAGATATTAAATGTGCAAATATCCTAGTGGATTCAAATGGATTAGTTAAACTGGCAGATTTTGGGCTTGCAAAAGAGATGTCAATTTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATTTACCTTACGCTCCTATTCAGAAGAGTGTAGGTGCTTTACCATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCACCTCTTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACGGTCTTGCAAGTTCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGAGCGTGTAAATTTTCTGATAGCAT] [+] EMBL CF322708 [ATTGTCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAGCATGAAAACATTGTTCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCTTGAACTAGTAACTCAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGTCTCAGCGTACACAAGGCAGATTTTGATAGGTTTGAACTATCTACACCAGCGGAACGTGTTACACAGAGATATTAAATGTGCAAATATCCTAGTGGATTCAAATGGATTAGTTAAACTGGCAGATTTTGGGCTTGCAAAAGAGATGTCAATTTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATTTACCTTACGCTCCTATTCAGAAGAGTGTAGGTGCTTTACCATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCACCTCTTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACGGTCTTGCAAGTTCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGAGCGTGTAAATTTTCTGATAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4323#0 TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAA 60 consensus_4323#1 ------------------------------------------------------------ consensus_4323#2 ------------------------------------------------------------ consensus_4323#0 GGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAAT 120 consensus_4323#1 ------------------------------------------------------------ consensus_4323#2 ------------------------------------------------------------ consensus_4323#0 GCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGG 180 consensus_4323#1 --------------------------------------------------TTAAAATTGG 10 consensus_4323#2 -------------------------------------------------------ATTG- 4 **** consensus_4323#0 TAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAAT 240 consensus_4323#1 TAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAAT 70 consensus_4323#2 TCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAG-----CATGAAAACATTGT 59 * * * ** *** * * * * ** * ** * *** *** * consensus_4323#0 TAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCC 300 consensus_4323#1 GAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCC 130 consensus_4323#2 TCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCT--TGAACTAGTA 117 *** * * * * * * *** * * * * ** ** ** * consensus_4323#0 ATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAAC 360 consensus_4323#1 ATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAAC 190 consensus_4323#2 ACT----CAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGT 173 * * ** * ** ** * * * *** * ** ** **** consensus_4323#0 TTGCTTGTACATAAGCTG-------------------------GAAAGCTGTTGAT-GCT 394 consensus_4323#1 TTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGAT-GCT 249 consensus_4323#2 CTCAGCGTACACAAGGC-----------------------------AGATTTTGATAGGT 204 * ***** *** ** * ***** * * consensus_4323#0 GAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTAC 454 consensus_4323#1 GAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTAC 309 consensus_4323#2 TTGAACTATCTACACCAGCGGAACGTGTTACACAGA----------GATATTAAATGTGC 254 * * *** * * * ** **** * ** * * * * consensus_4323#0 AGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAG 514 consensus_4323#1 AGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAG 369 consensus_4323#2 AA-ATATCCTAG-TGGATTCAAATGGA----TTAGTTAAACTGGCAGATTTTGGGCTTGC 308 * ** * * ** * ****** ** * * * *** *** ** * consensus_4323#0 AAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTT 574 consensus_4323#1 AAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTT 429 consensus_4323#2 AAAAGAGAT-GTCAATT--TTGAGTCAGGCA---AGATCTAGCAAGG-GAACTGTTTACT 361 ** * * * **** * ** * ** * * * * ** ** **** *** * consensus_4323#0 GTCCAAAGTTTTTAGTGCTGATTGT-CAGGGATTATGAGTTCCAGTGCGAACCATCGAAC 633 consensus_4323#1 GTCCAAAGTTTTTAGTGCTGATTGT-CAGGGATTATGAGTTCCAGTGCGAACCATCGAAC 488 consensus_4323#2 GG--ATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATT 419 * * * * * * * *** ** * * *** * * ** * * * consensus_4323#0 TACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTC 693 consensus_4323#1 TACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTC 548 consensus_4323#2 TACCTTACGCTCCT-------------------ATTCAGAAG-AGTGTAGGTGCTTTACC 459 *** ** * ** **** *** ** * *** * * * consensus_4323#0 GCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCAC 753 consensus_4323#1 GCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCAC 608 consensus_4323#2 ATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCAC--CTC 517 * ** ** * * * * ** * * * * ** **** * * consensus_4323#0 AGTTAACTTTTCTGACCGCGTTTCTGTACA-----GCGTTTTTGTACCTGTAAAGTGGCT 808 consensus_4323#1 AGTTAACTTTTCTGACCGCGTTTCTGTACA-----GCGTTTTTGTACCTGTAAAGTGGCT 663 consensus_4323#2 TTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACG 577 * **** * ** * * *** * * * *** ***** * consensus_4323#0 TCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGT 868 consensus_4323#1 TCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGT 723 consensus_4323#2 GTCTTGCAAGT-TCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGA 636 **** * *** * * ** * *** * ** *** * ***** consensus_4323#0 G-----AAATTGTCCAGAAAAATCAGTGT------------------------------- 892 consensus_4323#1 G-----AAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTT 778 consensus_4323#2 GCGTGTAAATTTTCTGATAGCAT------------------------------------- 659 * ***** ** * ** consensus_4323#0 --- consensus_4323#1 CAA 781 consensus_4323#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||