cluster # 4324

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Oryza sativa
cluster # 4324 cluster # 4324 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4324#0 length = 879 sequences # 1

consensus_4324#1 length = 471 sequences # 2

consensusID : consensus_4324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 879
fasta sequence

                              [CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTCTTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCACTCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAGTATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTCACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGGTAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAAAGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTACGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGAATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCACTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTATGTTTNTCGTCGATTATCGATATGTTTCCTTAAATTATGGAACTTTCTCANATAGACACGAAATGTGCCACTTTTGGATTTATTGGTTCTACTACAATG]

[+] EMBL CA758924             [CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTCTTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCACTCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAGTATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTCACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGGTAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAAAGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTACGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGAATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCACTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTATGTTTNTCGTCGATTATCGATATGTTTCCTTAAATTATGGAACTTTCTCANATAGACACGAAATGTGCCACTTTTGGATTTATTGGTTCTACTACAATG]




>consensus_4324#0
CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTC
TTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCAC
TCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAG
TATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTC
ACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGG
TAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAA
AGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTA
CGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGG
TGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCAT
CGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGA
ATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTC
CTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCA
CTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTA
TGTTTNTCGTCGATTATCGATATGTTTCCTTAAATTATGGAACTTTCTCANATAGACACG
AAATGTGCCACTTTTGGATTTATTGGTTCTACTACAATG

consensusID : consensus_4324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [CAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATG-TTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACG-AATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101529             [CAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATG TTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACG AATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTT                             ]
[+] EMBL AU101530             [                     AGAGGGATTTTTGGGACCGCAACNTGGCTTTAGAGTCTTCGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTCAATCTCAATGTTTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCTCAGATAAGACAACGAAATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGATATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4324#1
CAATGCCGGTGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTT
CGAGATCATCGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGA
GGCTCAGGAATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGA
AACTGTCTCCTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTT
GACCTGGCACTCTTACTAGTAGCAGTGTTTGGACCATATGGACTATATTTATGTGAGTTC
AATCTCAATGTTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAA
CTTTCTCAGATAAGACAACGAATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGA
CAATGATATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4324#0      CCATGGCGACATCAGAAGACACTCTTGTTTAGTCCGATTGGGAATATTAAACGAGTCCTC 60
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      TTCAGGGGGTCTAAATCCAGATTCTGTACCTAGTTGGTGGTTGCGCACTCACTCACTCAC 120
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      TCACTCTCAGTCAGCTAAGCTCCACTGGTAATCTCTTCTTGCGGGCTCTCCTCTCCAGAG 180
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      TATTACCCAGTTCAGTAATTAATTCGTGAGTTGCTCAATGGAAGTTATTCTAGTCATCTC 240
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      ACTCGTTTTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGG 300
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      TAAAGGGAAGGAAATACAATCACCAAACGGTGGAATGAAATTTAGGAGCTATACAAAGAA 360
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      AGAGGTATCGACTCACAACACAAGGAAGGATTGTTGGATCATAGTCAAGGACAAGGTGTA 420
consensus_4324#1      ------------------------------------------------------------
                                                                                  

consensus_4324#0      CGACGTAACCTCTTATGTGGAGGAACATCCAGGTGGTGATGAAATTCTAAACAATGCCGG 480
consensus_4324#1      ---------------------------------------------------CAATGCCGG 9
                                                                         *********

consensus_4324#0      TGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCAT 540
consensus_4324#1      TGGTGATTCAACAGAGGGATTTTTGGGACCGCAACATGGCTTTAGAGTCTTCGAGATCAT 69
                      ************************************************************

consensus_4324#0      CGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCANGA 600
consensus_4324#1      CGAAGATTTCTGCATCGGCAAACTGAAGGACTGATGATGATAGAGATGAGAGGCTCAGGA 129
                      ********************************************************* **

consensus_4324#0      ATCTCCCAAATGTGAACCCTTGCGTTCAACGGATGTTCCTTGAAGGAATGAAACTGTCTC 660
consensus_4324#1      ATCTCCCAAATGTGAACCCTTGCGTTCCACGGATGTTCCTTGAAGGAATGAAACTGTCTC 189
                      *************************** ********************************

consensus_4324#0      CTGCCTGTGATGAAGACTGGCCCCAGCTCCTGTGNGTCTCATTTCATCTTTGACCTGGCA 720
consensus_4324#1      CTGCCTGTGATGAGGACTGGCCCCAAGCTCTGTGGTTCTCATTTCATCTTTGACCTGGCA 249
                      ************* ***********    *****  ************************

consensus_4324#0      CTCTTACANNTAGCCAGTGTTGGGACCATATGGACTATATTTATTGTGAGTTCAATCTTA 780
consensus_4324#1      CTCTTACTAGTAGC-AGTGTTTGGACCATATGGACTATATTTAT-GTGAGTTCAATCTCA 307
                      *******   **** ****** ********************** ************* *

consensus_4324#0      TGTTTNTCGTCGATT-ATC----------GATATGTTTCCTTAAATT-ATGGAACTTTCT 828
consensus_4324#1      -ATGTTTCGTCGATTTATCTCTTTGAAAAGATATGTTTCCTTAGATTTATGGAACTTTCT 366
                        * * ********* ***          ************** *** ************

consensus_4324#0      CANATA-GACACGAAATGTGCCA-CTTTTGGATTTATTGGTTCTACTACAATG------- 879
consensus_4324#1      CAGATAAGACAACGAATGTGCCAACTTTTGTATTTATTGTTTCTACTACAATGACAATGA 426
                      ** *** ****   ********* ****** ******** *************       

consensus_4324#0      ---------------------------------------------
consensus_4324#1      TATGCATTTTTTACTTGGTCCAAAAAAAAAAAAAAAAAAAAAAAA 471