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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1688 fasta sequence
[CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATGGAC-ATGGTGGT-CGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAGGTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATGGTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAGATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATGCCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAGAACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTCGCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATTTGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGTTGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCCTGGTACTA]
[+] EMBL AK064380 [CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATGGAC ATGGTGGT CGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAGGTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATGGTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAGATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATGCCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAGAACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTCGCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATTTGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGTTGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCCTGGTACTA]
[+] EMBL CF322714 [ GCCGGCGGGCTCCCGTACTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAACTTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACAACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTGAAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAGGAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGAAAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAGCTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTCCTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATATGATGGACAATGGTGGTNCGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTGCAGCAGGATTACCACGTGAGTTGATGGA ]
consensusID : consensus_4325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762524 [GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTACACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTGATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGAAGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGAGGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTCACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGACAACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAGCCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4325#0 CTCTCCGACCCTCTCGTTCACCGGCGACGGCGGCGCTACGACGGCCGGCGGGCTCCCGTA 60
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CTCCGCTTCCTCCTCCTCCTCCTCAGTGCGCTGGTGAAATTGATAAGAGGCTGTTGGAAC 120
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 TTGGAAGCTGTATAGTTCAGGTCGTCATGGCTCATCAAAAGCGTGAAGCAACCAGCGACA 180
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 ACGGCGGTGGCGATGAAGAGTGGGCATCAAAACGCCCCAAAGTTGTCGGCGCTGCTGCTG 240
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 AAAAGGAGCACATTCTGACATCTGACGCTTCGCATGAAACGAATGGCGATGAAGCTCAAG 300
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GAGGAGATGCCTCTCGAAAGGAAAACACGGTGTCGACAAACCCGTGTGTTTCAGATGAGA 360
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 AAGCAGCAACCAACTCGAATGTTTCAAGTGGCCATGGGGTGATTTTGACTAGTGTGGAAG 420
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CTGATGCTGCAGAAGACAAGGGTTGCAGGCATACTATGGAAGATGCATGGGTGCTGCTTC 480
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CTGATGCTAGCATGGAATCTCCGGGAAACCTGAGGTGCGCTCATTTCGCAATATGTGATG 540
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GACATGGTGGTCGCCTGGCTGCAGAGTATGCACAGAAACATTTGCATCAGAATGTTATTG 600
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CAGCAGGATTACCACGTGAGTTGATGGATGTTAAAGCTGCAAAGAAGGCCATCATTGAAG 660
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GTTTTCGTAGAACTGATGAGTGCTTACTGCAAGAAAGTACTAAAGGAAACTGGCAAGATG 720
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GTGCAACAGCTGTCTGTGTCTGGGTCCTGGGGCAGACGGTGGTTGTTGCAAATGCTGGAG 780
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 ATGCTAAAGCTGTATTAGCTCGTTCCACATCAGCTGATGGTGAAGGTGCAGTGGATGATG 840
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CCAAAAGTCAACTGAAGGCTATTGTTTTGACCAGAGAACATAAAGCAATCTTTCCACAAG 900
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 AACGTGCTCGAATCCAAAAGGCTGGAGGATCTGTTGGCCCTAATGGCAGATTACAAGGTC 960
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTA 1020
consensus_4325#1 GCATTGAAGTATCTAGAGCTTTGGGTGATCGTCAGTTTAAGAAGGTTGGGCTGATTGCTA 60
************************************************************
consensus_4325#0 CACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTG 1080
consensus_4325#1 CACCAGACGTCCACTCCTTTGAAGTAACGAGAAAAGATCATTTTATTATTCTTGGGTGTG 120
************************************************************
consensus_4325#0 ATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGA 1140
consensus_4325#1 ATGGCTTATGGGGAGTATTTGGACCAGGTGATGCTGTTGAATTTGTGCAGAATCAATTGA 180
************************************************************
consensus_4325#0 AGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGA 1200
consensus_4325#1 AGGAGACCTCGTCAGCGACTCTGGCAGTGCGGCGGCTCGTGAAGGAAGCTGTTCGTGAGA 240
************************************************************
consensus_4325#0 GGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACCAGAATTCTTTTC 1260
consensus_4325#1 GGCGTTGCAAGGACAACTGCACTGCCGTGCTGATCGTCTTCAAGCACTAGAATTCTTTTC 300
*********************************************** ************
consensus_4325#0 ACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGAC 1320
consensus_4325#1 ACCCACTGCGACCGTTTTCGTTTTTTCACCAAGCTGAACTGGGGAAACGAATCATCTGAC 360
************************************************************
consensus_4325#0 AACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTC 1380
consensus_4325#1 AACGAACAATATCTAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTC 420
************************************************************
consensus_4325#0 TGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTCTATGTATTGTGATCGAGACC 1440
consensus_4325#1 TGTATTGTGATCGAGACCCTTGTGCACTGCTGTAGCCGTGTATGTATTGTGATCGAGACC 480
*************************************** ********************
consensus_4325#0 TTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAG 1500
consensus_4325#1 TTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAATATTGGAG 540
************************************************************
consensus_4325#0 CCCCTCCACTCCAAAATATAGCTTTATAGTACGAGATCAGATACAACCTAACAACGGATT 1560
consensus_4325#1 CCCCTCCCCTCCAAAATATAGCTTTATAGTACGAGATTAGATCCACCCTAAAAAAAAAAA 600
******* ***************************** **** ** ***** ** *
consensus_4325#0 TGAATAGGTTCTTTGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGT 1620
consensus_4325#1 AAAAAAAAAA-------------------------------------------------- 610
** *
consensus_4325#0 TGCTATATTTTGAGATTTTTGAGATGGAGGGAGTATTTTTCTAGATATTGGAGTAATTCC 1680
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 TGGTACTA 1688
consensus_4325#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||