cluster # 4326

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Oryza sativa
cluster # 4326 cluster # 4326 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4326#0 length = 942 sequences # 2

consensus_4326#1 length = 436 sequences # 1

consensusID : consensus_4326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence

                              [TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGACGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGCGGCGGCGAGAGGGGATGGGTGGAGCATGCTGTCCCGCGCCCGAGTCCTGCTCGAGGAGGGCAAGCCGTCGCTCGCGCTGCAGGCGATTCTCTTGGCCATAAGATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCAGATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK066467             [TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGACGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGCGGCGGCGAGAGGGGATGGGTGGAGCATGCTGTCCCGCGCCCGAGTCCTGCTCGAGGAGGGCAAGCCGTCGCTCGCGCTGCAGGCGATTCTCTTGGCCATAAGATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCAGATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTAT                                               ]
[+] EMBL AU101536             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GATAATTTTNGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTNGCNCCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTNCCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGNGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4326#0
TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATC
ATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGA
TCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGA
CGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGC
TGCGGCGGCGGCGGCGGCGAGAGGGGATGGGTGGAGCATGCTGTCCCGCGCCCGAGTCCT
GCTCGAGGAGGGCAAGCCGTCGCTCGCGCTGCAGGCGATTCTCTTGGCCATAAGATCCCA
AGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCTACAGGCAAAG
ATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGC
AGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGAT
GCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCAGATAATTTTAGA
TGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGTTTAGCACCTC
GCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATA
ATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATTTTGATCTTCTGT
TACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAGCTTGCCATATCC
CTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAATCTCTATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGACGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGATTTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCCATAAAGATCCCCAAGGGTTGGTTAAACCAGGGCTCCTCATTCCCGAACCCCCGAAACCCGTTGCCACCGGGGAAACC]

[+] EMBL CA753238             [TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGATCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGACGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCTGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGATTTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCCATAAAGATCCCCAAGGGTTGGTTAAACCAGGGCTCCTCATTCCCGAACCCCCGAAACCCGTTGCCACCGGGGAAACC]




>consensus_4326#1
TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATCA
TCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGAT
CGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGAC
GTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGCT
GCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGATT
TCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCCA
TAAAGATCCCCAAGGGTTGGTTAAACCAGGGCTCCTCATTCCCGAACCCCCGAAACCCGT
TGCCACCGGGGAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4326#0      TTTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATC 60
consensus_4326#1      -TTCAGTTCGCCTCTTCTCCAATAAAGCAGCCGCCCCAGCACTCACGAACTCCTGGAATC 59
                       ***********************************************************

consensus_4326#0      ATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGA 120
consensus_4326#1      ATCCGGAGCCGCATCCCGCCGCCGCCGCCGTGCACCCGCCTACCGGCGGCGACCCGTCGA 119
                      ************************************************************

consensus_4326#0      TCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGACCCGTACGA 180
consensus_4326#1      TCGGGAGTGAGTGAGGCAGAGAGGGCGCGAGATCGAGGCGTGGGAGATGGAACCGTACGA 179
                      *************************************************** ********

consensus_4326#0      CGTCGAGATGGAGGCCGCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGC 240
consensus_4326#1      CGTCGAGATGGAGGCCCCGGAGGGGGAGCCGATGGCCGAGCAGGCTCCGCCGCCGGCTGC 239
                      **************** *******************************************

consensus_4326#0      TGCGGCGGCGG---CGGCGGCGAGAGGGGATGGGTGGAGCATGC-TGTCCCGCGCCCGAG 296
consensus_4326#1      TGCGGCGGCGGGCGCCGCCGCGAGAGGGGATGGGTGGAGCATGCCTGTCCCCCTCCCGAT 299
                      ***********   * ** ************************* ****** * ***** 

consensus_4326#0      TCCTG-CTCGAGGAGGGCAAGCCGTCGCTCG--CGCTGCAGGC--GATTCTCTTGG--CC 349
consensus_4326#1      TTCCGGCTCCAGGAAGGCCACCCCTCTCTTCGCCCCCGCATGCCCATTCCTCTTGGGGCC 359
                      * * * *** **** *** * ** ** **    * * *** **    * *******  **

consensus_4326#0      ATAA-GATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACT 408
consensus_4326#1      ATAAAGATCCCCAAGGGTTGGTTAAAC---CAGGGCTCCTCATTCCCGAACCCCCGAAAC 416
                      **** ****** * * * **   *  *   ** *    * *    ***  * *  ***  

consensus_4326#0      CTACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACA 468
consensus_4326#1      CCGTTGCCACCGGGGAAACC---------------------------------------- 436
                      *    * **  *   * * *                                        

consensus_4326#0      ATGTGCTATAGCAGAGTCGCAGTCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGA 528
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      CCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGCTGAGAGTGGAAGGAAGCA 588
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      GATAATTTTAGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCT 648
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      GTTTAGCACCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTG 708
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      GCGATGCCCATAATTATACCTGTGGCCACCCCAGTCAATGATCATGGTACCCGTGAGATT 768
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      TTGATCTTCTGTTACACCGAGGCAAGAGCATTGCCAATGTTGGACATTGTGTGGATAAAG 828
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      CTTGCCATATCCCTGTAATCTGTTCATCCTGTACTTTTTTGCTGGTGAAGTGGAAAAAAA 888
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      TCTCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 942
consensus_4326#1      ------------------------------------------------------