|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG]
[+] EMBL AF074741 [CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG]
consensusID : consensus_4333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC]
[+] EMBL CB669152 [CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC]
consensusID : consensus_4333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC]
[+] EMBL CB647659 [GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4333#0 ------------------------------------------------------------
consensus_4333#2 GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCA 60
consensus_4333#1 ------------CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCA 48
consensus_4333#0 -------------------------------------CACGAGCTCACCGGAAAGTCCGG 23
consensus_4333#2 CTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGG 120
consensus_4333#1 CTTGTTATAAA-ACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCA 107
* * **** *
consensus_4333#0 GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 82
consensus_4333#2 GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 179
consensus_4333#1 AACACGCATG-ACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTAC 166
*** * * ** *** *** *** * * * * ** * *** *
consensus_4333#0 AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACC 142
consensus_4333#2 AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACC 239
consensus_4333#1 ATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCA-TCATATTACAG--CGTATC 223
* * * * * * ** * * * ** *** ** * * * *
consensus_4333#0 GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTN 202
consensus_4333#2 GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTT 299
consensus_4333#1 AGAGTTACAATGACTCA--TGGCCGGTCGC-CGCCGGCAGTTGTTCCCTCTCGCTATGCT 280
* ** ** *** ** *** *** * * *
consensus_4333#0 GNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGG-AGCACCTCCCTC 261
consensus_4333#2 GCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGG-AGCACCTCCCTC 358
consensus_4333#1 AAGTTGCCATGCGG----ATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGAT 336
* * * * * * * * *** ** ****
consensus_4333#0 GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 321
consensus_4333#2 GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 418
consensus_4333#1 ATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTC----TAAGTCCTAAACTGT 392
** * ** *** * ** ** *** *** ** * *
consensus_4333#0 AATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAAC 381
consensus_4333#2 AATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGAC 478
consensus_4333#1 AACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGAT 452
** * * * * * ** * **** * * ** * * ** * ** *
consensus_4333#0 ACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTG-A 440
consensus_4333#2 ACCGAGGCACGATATT-GATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTG-A 536
consensus_4333#1 CATGATGGA-GAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCA 511
** * * ** ** ** * * ** * * ** **** *
consensus_4333#0 TTATGG-GCGCTCCTCCCGATCCAGCATATTAC-AGCGTATCA--AANTTACAACNACTT 496
consensus_4333#2 TTATGG-GCGCTCCTCCCGATCCAGCATATTACCAGCGTATCA--AAGTTAC-------- 585
consensus_4333#1 ATACATTATGCAGTATGCAAAACTGCATATCAGGAG-ATATCAGGAAACTACGCGATGAT 570
** ** * * * ****** * ** ***** ** ***
consensus_4333#0 ACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACA 556
consensus_4333#2 ------------------------------------------------------------
consensus_4333#1 AGGTAAGCAACTCGAC-------------------------------------------- 586
consensus_4333#0 ACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTC 616
consensus_4333#2 ------------------------------------------------------------
consensus_4333#1 ------------------------------------------------------------
consensus_4333#0 CTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAA 676
consensus_4333#2 ------------------------------------------------------------
consensus_4333#1 ------------------------------------------------------------
consensus_4333#0 ACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG 721
consensus_4333#2 ---------------------------------------------
consensus_4333#1 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||