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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1466 fasta sequence
[CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCGATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCCGCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCCGGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACCATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCCCCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCCAAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAGGGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTCCCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGTCCAAGGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAAGTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGACGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCCAGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGACGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACACGGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGAGACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAGGGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAGAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTAATTATTTGCTACCGAGAT]
[+] EMBL AK070817 [CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCGATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCCGCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCCGGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACCATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCCCCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCCAAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAGGGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTCCCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACCGCTGGCTCGAGTCCAAGGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAAGTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGACGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCCAGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGACGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACACGGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGAGACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAGGGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAGAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTAATTATTTGCTACCGAGAT]
consensusID : consensus_4334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA754708 [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_4334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA754734 [CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAAAAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTTTTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CAGCGTCTGAACTGAAAAAGAAAAGAGAAGAAGAAGAAACTGAAGAGAGGAATCCGGGCG 60
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 ATGGGTGCGGTGTCCATGTCGACAACGACACGCCTCCCCCTCGTCGCCGCCCTCCTCTCC 120
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GCCGCTGCTTGCGTCGCAGCAGCGCAGCCGGCCACCGCCGAGGCCGCCCCGGAGACGCCC 180
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GGCGTAGGCATCAAGGTGTCGTTCCGCCCCAGCGTAGCCATCGTCGTTGGCATCTTCACC 240
consensus_4334#1 ---------------------------CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCG 33
consensus_4334#2 ---------------------------CCATCGCTCGTCGTACAGCGCGCTGGTTCGCCG 33
consensus_4334#0 ATGATCTTCTCGCTCACCTTCCTTCTCCTCATGTACGCCAAATTCTGCCATCCATCCTCC 300
* * ** * * ** * ** *
consensus_4334#1 GCCGCGAGAGCCGCCACGACGA-GGCTGCCCCGGTGGTTGACTCGC-CGCCGGCGTC-CC 90
consensus_4334#2 GCCGCGAGAGCCGCCACGACGA-GGCTGCCCCGGTGGTTGACTCGC-CGCCGGCGTC-CC 90
consensus_4334#0 CCCGTCGCCGCCCCCGCCCCCACGGTCGTCCCGGCGGCGGCGGCGGACGACGGCGTCGCC 360
*** *** ** * * * ** * ***** ** * ** ** ******* **
consensus_4334#1 ATTCCAATTCCCTTGTCTA-GTCGTCTATCTCATCTATT-CTAACTTCAAATCAAACAAA 148
consensus_4334#2 ATTCCAATTCCCTTGTCTA-GTCGTCTATCTCATCTATT-CTAACTTCAAATCAAACAAA 148
consensus_4334#0 AAGCCGGTGATCGAGTCTCTGCCTTTCTTCCGATTCGCGGCTCTCCGCGGGGCCAGGCAG 420
* ** * * **** * * * ** ** ** * * * * *
consensus_4334#1 AAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 208
consensus_4334#2 AAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 208
consensus_4334#0 GGGCTGGAGTGCGCGGTGTGCCTGGCGCGCTTCGACGACGCGGACCTGCTCCGCCTCCTC 480
* * **** **** * * ** * * * ** * * * *
consensus_4334#1 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 268
consensus_4334#2 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 268
consensus_4334#0 CCGCGCTGCCGCCACGCCTTCCACCTCGACTGCGTCGACC--GCTGGCTCGA--GTCCAA 536
* * ** * ** * ** * * * * * ****** * *
consensus_4334#1 AGTCAGGTACC------GTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGC 322
consensus_4334#2 AGTCAGGTACC------GTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGC 322
consensus_4334#0 GGCCAGCTGCCCTCTCTGCCGCGCGCGCGTCGACGCCGAAGATGCCGCGCTCGGCCTCAA 596
* *** * ** * * * * * *** * * * *
consensus_4334#1 -TACTCCTTTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 381
consensus_4334#2 -TACTCCTTTTGTCCNTTANNAAAAAAAAAAAAAAAAAAAAAAA---------------- 365
consensus_4334#0 GTACGCCTCCAGCGCACGCTTCGTCCCGGCCGGGGGGGCGTCCGAGTCCGAGCGCTTTGA 656
*** *** * *
consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 441
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CGGCGACCAAGACCTCCTGGGCATCTTCGTCGAGCGCGTTCCGTCGTCGCGGATGGAGCC 716
consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 501
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 AGCGGCAGCGGCACACTGCCCTGATCTGGACCGCTACAAGCACCGCATCGTGGTGTCGGA 776
consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 561
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CGCGGTGTTCAAGAGCCGATGGAGCGAGATCAACTCCTCCGACCTCATCGCGCTCGACAC 836
consensus_4334#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------- 602
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GGAGCTGCTTCGGTCCATGGAGACGATGGAGGTGGAGATGGAGATGGAGCTGTACAAGGA 896
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GACGGAGGAGGAGGAGACAGATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGG 956
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATGATATCATCGTCGTCGTCGTC 1016
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAG 1076
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTT 1136
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CGCCGGCCGCGAGAGCCGCCACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTC 1196
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 CCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATTCTAACTTCAAATCAAACAAA 1256
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 GAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT 1316
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGG 1376
consensus_4334#1 ------------------------------------------------------------
consensus_4334#2 ------------------------------------------------------------
consensus_4334#0 AGTCAGGTACCGTAGTACATAGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCC 1436
consensus_4334#1 ------------------------------
consensus_4334#2 ------------------------------
consensus_4334#0 TTTTGTCCATTAATTATTTGCTACCGAGAT 1466
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||