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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence
[AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG]
[+] EMBL CB680312 [AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGAGCACGGCGTAGCCGAGCAGGCGGTACGCGGCGACGAATCCCAGCATGACGCCCACGTTGCGCCACCGGCACTCGTCGCCGAGCCCCTCCCGGCGCAGCACCTCGTCTCCGGTGGCCACGCAGGCGCCCATCACCCGCGCCACGCACCTCCCCCCGCCCGCGAACTCGTTCACCAGCAGCGCCTCGAACGGCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCCGGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACCAGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACCGGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCCACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGCTCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG]
[-] EMBL CA767538 [ GCCACTTGAACAGCGACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCGGAGAAGAGGAAGAAGGAC ]
consensusID : consensus_4348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT]
[-] EMBL BI805815 [TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGTGCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTCATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCTGATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTGCCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCTCGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCACCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGCTNGGACAGGTTATGTGCATGAGACACCCCNAAGCACTGGATCTGTGCAATCTGCCCTGGACCCTGGCCTGCTGAANTTGACAGTCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4348#0 -----------AAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 49
consensus_4348#1 TTTTTTTTTTGAAACGAGGAAACATGATCGATCGCGTTAAGGGAAACAGTAGTACTAGGT 60
*************************************************
consensus_4348#0 GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 109
consensus_4348#1 GCTAGTACAGTAGTAGATGGTCAGGAGGGGGAGGTAGACGACGGCGAGGATCCGGTGCTC 120
************************************************************
consensus_4348#0 ATGAG-GCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 168
consensus_4348#1 ATGAGTGCCCCGGGTGGGCCTGCTGGGCCTGGGCCTGAGCGCAAGGGTGCACCTTGCCCT 180
***** ******************************************************
consensus_4348#0 GA-GCAC-GGCGTAGCCGAG-CAGGCGGTAC----GCGGCGACGAATCCCAGCATGAC-G 220
consensus_4348#1 GATGCACTGGTGTAGCCGANGCAGGCGGTACTGCTGTGCTGACGAATCCCAGCATGACTG 240
** **** ** ******** ********** * * ****************** *
consensus_4348#0 CCCAC-GTTGCGCCACCGG--CACTC-GTC-GCCGA-GCCCCTCCCGG--CGCAGCACCT 272
consensus_4348#1 CCCACTGTTGCGCCACCTGTGCACTCTGTCTGCCGATGCCCCTCCCGTGCTGCAGCACCT 300
***** *********** * ***** *** ***** ********** *********
consensus_4348#0 CGTC-TCCG----GTGGCCAC-GCA-GGCGCCCATCACCCGC----GCCACGCACCTCCC 321
consensus_4348#1 CGTCATCCGTGATGTGTCCACTGCATGGCGCCCATCACCCGCTGCCACTGCACACTCCCA 360
**** **** *** **** *** **************** * * *** **
consensus_4348#0 CCCGCCCGC-GAACTC--GTTCACCAGCAGC-GCCTC--GAAC-GGCCACTTG-AACAGC 373
consensus_4348#1 CCCGGCCGCTGAACTCTGGTTCACCAGCAGCTGCCTCTGGAACTGGNCACTTGCAACAGC 420
**** **** ****** ************* ***** **** ** ****** ******
consensus_4348#0 GACAGGTAGTGCATGAACACCCAGCACGACGGCATCGCCGACCGCGCGATGAAGTAGCCG 433
consensus_4348#1 TN-GGACAGGTTATGTGCATGAGACACCCCNA-AGCACTGGATCTGTG-CAATCTGCCCT 477
* ** *** ** *** * * * * * * * * * **
consensus_4348#0 GAGAAGAGGAAGAAGGACCCCATCACCCCCTGTATCGCCGCATTCCCCACCACGAAGTCC 493
consensus_4348#1 GGACCCTGGCCTGCTGAANTTGACAGTCAGT----------------------------- 508
* ** ** ** * *
consensus_4348#0 GGCGCCGCCGCCGCGAAGCACACCACCACCGAGTTCGCCGTGTACAGGATCAGCCACACC 553
consensus_4348#1 ------------------------------------------------------------
consensus_4348#0 AGCACCACGAAGTAGCCGAACGCCGCCGCCGTCCTCCGGAGCCCCGCCATCCAGTACACC 613
consensus_4348#1 ------------------------------------------------------------
consensus_4348#0 GGCGCCGCGAACACCACGGCCAGCGCCAGCTGGAACGGCAGGAACACCACCGCGTTCGCC 673
consensus_4348#1 ------------------------------------------------------------
consensus_4348#0 ACCGCGTAAGACGACACGCGGTACGCGCCCGACGACGTCTCCTTGGCCAGGATCTCCCGC 733
consensus_4348#1 ------------------------------------------------------------
consensus_4348#0 TCCTGCAGGAAGATGGGCAGCGCCTCCGTGGTGGACGACAGCAGG 778
consensus_4348#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||