cluster # 4350

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Oryza sativa
cluster # 4350 cluster # 4350 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4350#0 length = 585 sequences # 2

consensus_4350#1 length = 427 sequences # 1

consensusID : consensus_4350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence

                              [TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCTCCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGAGTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCCTCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAACGCCCTGGAGCACGCACCG-GAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCTCGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACGCCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATCTTTTCTTCACCGGCGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT]

[+] EMBL CF307678             [TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCTCCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGAGTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCCTCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAACGCCCTGGAGCACGCACCG GAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCTCGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACGCCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATCTTTTCTTCACCGGCGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT]
[+] EMBL CF307769             [                                                                                                                                                                                                                                  AGCCACGCTGGCAACGCCCTGGAGCACGCACCGCGAGCGCCGCCACTTCAACCATCGTCGTCGGCCGGCCATTATCGACCACCTCAGAGCAAG                                                                                                                                                                                                                                                                           ]




>consensus_4350#0
TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCT
CCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGA
GTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCC
TCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAA
CGCCCTGGAGCACGCACCGGAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCT
CGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACG
CCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATCTTTTCTTCACCGGC
GCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCCG
TTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCAC
CGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT

consensusID : consensus_4350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [GACGACCATCGCCATCGCTGATTGGGTAAAGGTCATCTCCAGCCACCGGAACGCGACCACGCCGACGATGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCTCATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGGCGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG]

[+] EMBL CF322912             [GACGACCATCGCCATCGCTGATTGGGTAAAGGTCATCTCCAGCCACCGGAACGCGACCACGCCGACGATGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCTCATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGGCGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG]




>consensus_4350#1
GACGACCATCGCCATCGCTGATTGGGTAAAGGTCATCTCCAGCCACCGGAACGCGACCAC
GCCGACGATGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCG
GCCATTCTCATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCT
TCAAAACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTC
TTCACCGGCGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTC
ATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCC
ACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATA
ATCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4350#0      TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCT 60
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      CCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGA 120
consensus_4350#1      ------------------------------------------------------------
                                                                                  

consensus_4350#0      GTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCC 180
consensus_4350#1      -----------------------------------------------GACGACCATCGCC 13
                                                                     * *** ***  **

consensus_4350#0      TCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAA 240
consensus_4350#1      ATCGCTGAT-TGGGTAAAGGTCATC---TCCAGCCACCGGAACGCGA-CCACGCCGACGA 68
                           ***  *         ** *    * ** *    ******* * ****** *** *

consensus_4350#0      CGCCCTGGAGCACGCACCGGAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCT 300
consensus_4350#1      TGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCT 128
                       **************************** ************* ****************

consensus_4350#0      CGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACG 360
consensus_4350#1      CATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACG 188
                      *  *********** ***** ********* ****** ***** ************ ***

consensus_4350#0      CCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATC-TTTTCTTCACCGG 419
consensus_4350#1      CCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGG 248
                      ******************** *  * *** **  ************ *************

consensus_4350#0      CGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCC 479
consensus_4350#1      CGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCC 308
                      **** ****** ** ***** ********* *****************************

consensus_4350#0      GTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCA 539
consensus_4350#1      GTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCA 368
                      ************************************************************

consensus_4350#0      CCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT------------- 585
consensus_4350#1      CCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG 427
                      **********************************************