These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCTCCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGAGTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCCTCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAACGCCCTGGAGCACGCACCG-GAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCTCGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACGCCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATCTTTTCTTCACCGGCGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT] [+] EMBL CF307678 [TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCTCCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGAGTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCCTCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAACGCCCTGGAGCACGCACCG GAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCTCGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACGCCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATCTTTTCTTCACCGGCGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT] [+] EMBL CF307769 [ AGCCACGCTGGCAACGCCCTGGAGCACGCACCGCGAGCGCCGCCACTTCAACCATCGTCGTCGGCCGGCCATTATCGACCACCTCAGAGCAAG ] consensusID : consensus_4350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [GACGACCATCGCCATCGCTGATTGGGTAAAGGTCATCTCCAGCCACCGGAACGCGACCACGCCGACGATGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCTCATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGGCGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG] [+] EMBL CF322912 [GACGACCATCGCCATCGCTGATTGGGTAAAGGTCATCTCCAGCCACCGGAACGCGACCACGCCGACGATGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCTCATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACGCCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGGCGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCCGTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCACCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4350#0 TCGCCCAACTCCCACATCACTCTGGAGCTGAAGAAGTCGAGGGAGAGGTCCTCAGCCTCT 60 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 CCGTCATCCTCAACCTCGCCGCCGGTCATAGTGACGACGACCTTCGCCATCTCCGTTTGA 120 consensus_4350#1 ------------------------------------------------------------ consensus_4350#0 GTCAAGGTCACCTCCATCTCTTTCGCGTTCCCATCTCTCCACACAATGCCGAGCATTTCC 180 consensus_4350#1 -----------------------------------------------GACGACCATCGCC 13 * *** *** ** consensus_4350#0 TCTTTTGACCTAAACCCCTCTCGTGCAGTGCATCGCTGGGAACGCAAGCCACGCTGACAA 240 consensus_4350#1 ATCGCTGAT-TGGGTAAAGGTCATC---TCCAGCCACCGGAACGCGA-CCACGCCGACGA 68 *** * ** * * ** * ******* * ****** *** * consensus_4350#0 CGCCCTGGAGCACGCACCGGAGCGCCGCCACTTCAACCATCGTCGTCGTCCGGCCATTCT 300 consensus_4350#1 TGCCCTGGAGCACGCACCGGAGCGCCGCCGCTTCAACCATCGTTGTCGTCCGGCCATTCT 128 **************************** ************* **************** consensus_4350#0 CGACCACCTCAGAGCAAGCCACTGCGCCATCGTCATCGCCTCATCCTCCTCTTCAATACG 360 consensus_4350#1 CATCCACCTCAGAGAAAGCCGCTGCGCCATTGTCATCACCTCAACCTCCTCTTCAAAACG 188 * *********** ***** ********* ****** ***** ************ *** consensus_4350#0 CCTCAAGAACCCCAGCCGGAGATGTGAAGGACTTGGAGAACACATC-TTTTCTTCACCGG 419 consensus_4350#1 CCTCAAGAACCCCAGCCGGAAACATCAAGAACACGGAGAACACATCCTTTTCTTCACCGG 248 ******************** * * *** ** ************ ************* consensus_4350#0 CGCCGATCTAGAATTGCCTCCGCCGTCATCATCGATTACCGCTGCCTCGCTCATTGTCCC 479 consensus_4350#1 CGCCAATCTAGGATCGCCTCTGCCGTCATCGTCGATTACCGCTGCCTCGCTCATTGTCCC 308 **** ****** ** ***** ********* ***************************** consensus_4350#0 GTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCA 539 consensus_4350#1 GTTCGAGCCGTCGTCGTTCACCCGAGGAGGAGCGCCGTCGCCGAGCCGTTCCACAAGTCA 368 ************************************************************ consensus_4350#0 CCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAAT------------- 585 consensus_4350#1 CCGCTGCCGCCAAGACCTCGACAACCCTAGCTCGACCCACGATAATTGCATAATCGGTG 427 ********************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||