cluster # 4352

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Oryza sativa
cluster # 4352 cluster # 4352 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4352#0 length = 757 sequences # 2

consensus_4352#1 length = 611 sequences # 1

consensusID : consensus_4352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGGGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG]

[+] EMBL CB653446             [CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGGGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG]
[+] EMBL CF319595             [                                                               GGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_4352#0
CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCC
CCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTC
TGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCC
TTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGG
TCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTC
TGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTC
CTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGA
GCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGA
TATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAA
CAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCC
CATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCT
AAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGG
GAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG

consensusID : consensus_4352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [GCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCA]

[+] EMBL CF322993             [GCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCCTTCAAGGCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAGCA]




>consensus_4352#1
GCTTCCCCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAAT
GCTTTCTGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCA
CGGGCCTTCAAGGCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGGTCAGCTCACTG
AAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTCTGCTTCACATG
TGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTCCTTTTCCCCTA
GCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATG
TGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATT
TGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAACAATGGGGGTA
ACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCCCATCAACGGTG
GGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTA
GCATATGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4352#0      CCCTTCTGGCTGTAATGGCGATGGCGGCGACGTCGGCGAGCGGCGGCGCCGGCTGCTTCC 60
consensus_4352#1      ------------------------------------------------------GCTTCC 6
                                                                            ******

consensus_4352#0      CCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTC 120
consensus_4352#1      CCAGGCCTCCTCCCTCCGGCGGCGAGGAGAAGAAGCAAGATGAGGAGGGGCAATGCTTTC 66
                      ************************************************************

consensus_4352#0      TGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCC 180
consensus_4352#1      TGGATGGAATGGACTTGCTCAAGGATGCGACGGAGAACAAGCGCTTCCTCCCCACGGGCC 126
                      ************************************************************

consensus_4352#0      TTCAAGGGTACTCCTATCTTCAATCGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGG 240
consensus_4352#1      TTCAAGG-----------------CGTCGACGCGCTTCTTGGAGGCGGCCTGCGCCAAGG 169
                      *******                 ************************************

consensus_4352#0      TCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTC 300
consensus_4352#1      TCAGCTCACTGAAATAACCGGCCAATCGTCCTCCGGTAAAACACAGGTCTGTCTTTGTTC 229
                      ************************************************************

consensus_4352#0      TGCTTCACATGTGGCAGCCAGGCAGGTGGGTGTTGTTATGTACTTGGATACTAGCAATTC 360
consensus_4352#1      TGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATTC 289
                      ************************* **********************************

consensus_4352#0      CTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGA 420
consensus_4352#1      CTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGA 349
                      ************************************************************

consensus_4352#0      GCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGA 480
consensus_4352#1      GCCAAAGAATGTGCGACTCGAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGA 409
                      ************************************************************

consensus_4352#0      TATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAA 540
consensus_4352#1      TATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATTGTCACTGAAGAGCAAGGTAAA 469
                      ************************************************************

consensus_4352#0      CAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCC 600
consensus_4352#1      CAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTCC 529
                      ************************************************************

consensus_4352#0      CATCAACGGTGGG-AAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTC 659
consensus_4352#1      CATCAACGGTGGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTC 589
                      ************* **********************************************

consensus_4352#0      TAAAGAAGCTAGCATATGAGCATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTG 719
consensus_4352#1      TAAAGAAGCTAGCATATGAGCA-------------------------------------- 611
                      **********************                                      

consensus_4352#0      GGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGG 757
consensus_4352#1      --------------------------------------