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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence
[TCTTTTTATTGAAGACCAAAAGAAGTTTATATATTTATTCAACATGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC]
[+] EMBL CB668938 [TCTTTTTATTGAAGACCAAAAGAAGTTTATATATTTATTCAACATGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAA ]
[+] EMBL CB623311 [ GACCAAAGGAAGTTTATATATTTATTCAATAGGCTATAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC]
consensusID : consensus_4356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAAGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGTTACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA]
[-] EMBL BI813511 [TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAAGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGTTACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4356#0 TCTTTT---TATTGAAGACCAAAAGAAGTTTATATATTTATTCAA-CATGCTAAAAACTT 56
consensus_4356#1 TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTT 60
* **** *********************************** * ***********
consensus_4356#0 GCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAA 116
consensus_4356#1 GCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAA-GTACAGGAGCAATGAAA 119
****************************************** *****************
consensus_4356#0 ATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAA 176
consensus_4356#1 ATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAA 179
************************************************************
consensus_4356#0 CTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCA-TGTGT 235
consensus_4356#1 CTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGT 239
************************************************** *** *****
consensus_4356#0 TACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAAC 295
consensus_4356#1 TACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATT-GTCCCACGACATCAAC 298
************** **************************** ****************
consensus_4356#0 CAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATG 355
consensus_4356#1 CAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATG 358
************************************************************
consensus_4356#0 ACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGA 415
consensus_4356#1 ACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGA 418
************************ ***********************************
consensus_4356#0 AGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTT 475
consensus_4356#1 AGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTT 478
************************************************************
consensus_4356#0 TTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCA 535
consensus_4356#1 TTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA------------------------ 514
************************************
consensus_4356#0 CCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGT 595
consensus_4356#1 ------------------------------------------------------------
consensus_4356#0 GGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCT 655
consensus_4356#1 ------------------------------------------------------------
consensus_4356#0 TGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCG 715
consensus_4356#1 ------------------------------------------------------------
consensus_4356#0 CTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCT 775
consensus_4356#1 ------------------------------------------------------------
consensus_4356#0 AATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC 835
consensus_4356#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||