These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGAATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACGCGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAACAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGAGAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCTAAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGATTGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGATGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTGACACTTCAGCAGGATGCCCATAATCATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGGCCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGGAACATCTTTGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTGCTCATACTGTGATGGATCAAACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT] [+] EMBL CB634690 [TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGAATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACGCGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAACAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGAGAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCTAAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGATTGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGATGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTGACACTTCAGCAGGATGCCCATAATCATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGGCCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGGAACATCTTTGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTGCTCATACTGTGATGGATCAAACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT] consensusID : consensus_4367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [GGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTAATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGCGGTACTAGCAGCTCCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC] [-] EMBL CA754341 [GGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTAATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGCGGTACTAGCAGCTCCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC] consensusID : consensus_4367#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCCAAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGGAAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTCTGAATAATGAGCTCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAGCTCAACATTTCTGCAGAATCTTCATCAAAAGGACTGCTATACCGGGTTTGGCCTCCCACTACAGGAAAAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGTTCCCAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACAACATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGAAAAATCCCC] [+] EMBL CA754224 [GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCCAAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGGAAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTCTGAATAATGAGCTCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAGCTCAACATTTCTGCAGAATCTTCATCAAAAGGACTGCTATACCGGGTTTGGCCTCCCACTACAGGAAAAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGTTCCCAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACAACATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGAAAAATCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4367#0 TATCTGTTCAAACAATCTTTCATAACAGAATAAGAGGAATGGTTCATCTCCCTACACAGA 60 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 ATGCAGCAAGACCAGAATGTACATGGTTACTCGAGCACAGCCTTGCAGCAAAACTGCACG 120 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 CGATTGCTGGCTCCTGAACACTTAGCTAGGAGAGGTACAGCTACACCAAAAGGGTTGCAA 180 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 CAGATCACGCGATAAACTGCTGGGTGAAATCATCAACATGATGCAGACTCAAAGTACTGA 240 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 GAATAGCTGTTCCACCAGGAACTAAAAACCCAAAACACGGTCTTTGTTGCTTTGGCTCCT 300 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 --------GGTCTACTGGAGCGCAAACAATGGAGCGGNTCNTNNTCTCAGNNTTGAATCC 52 consensus_4367#0 AAACAAGGCTGAGTTCTTTACAGCAGCAATAAGTTGTACACCACCAAATTCAGTCTTGAT 360 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 AAATGCCACTCCCTTTGTGCCTCCCCCAGGTCTTCGTTTGAAGAAAGCTTGAGCGGGAGG 112 consensus_4367#0 TGTCAAGAAGAATGACTTCAATAACATGTAGCTGAAGGGTAATTGTTCTGCCAAGGTAGA 420 consensus_4367#1 ------------------------------------------------------GGTGGA 6 consensus_4367#2 AAGGGCTCTGAGAAGCAAGTAGGTGATTCAGAANAGGATGAGACTGCTGACCAGTCTTTC 172 * consensus_4367#0 TGAAGAGCGACGCCGTTGCTGCTGCTACTTCGCTG-ACACTTCAGCAGGATGCCCATAAT 479 consensus_4367#1 TGAAGAGCGATAC---TGCTGCTGCTACTTTCCTG-ACACTTCAGCAGATTTCCCCTAAT 62 consensus_4367#2 TGAATAATGA-GC---TCCCCAGATTCCTTTCTTGGACGACTATGTGAAAGCCTAGGAAG 228 **** * ** * * * * *** ** ** * * * ** consensus_4367#0 CATCACCTTCACACAGATCAGCAAGCATATCGATTGTGAGTTCTGTATCAAATTCATGGG 539 consensus_4367#1 CATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGG 122 consensus_4367#2 CTCAACATTTCTGCAGA-----ATCTTCATCAAAAG-GACTGCTATACCGGGTT--TGGC 280 * ** ** **** * *** * * * * ** ** * * *** consensus_4367#0 CCTTCAGTGCTTCAACAATGAAGTCGGCAGACACATCTGGG-AACATCTTTGAGAGAGAT 598 consensus_4367#1 CCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGG-AACATCTTCGAGAGAGAT 181 consensus_4367#2 CTCCCACTACAGGAA-AAGGGGGTGAAAACATCCTGCTGGGGAAAACCCTCTCGAAAAGT 339 * ** * * ** ** * ** * * * ***** ** * * * ** * * consensus_4367#0 TCTACCACAGCAAGATGATTATC------AACACCATTTTGCTCATACTGTGATGGATCA 652 consensus_4367#1 TCTACCACAGCAAGATGATTATC------AACACCATTTTCCTCGTAGTGCGATGGATCA 235 consensus_4367#2 TCC-CAAGGGGCTGGTGACTTCATGGTGAAAAACTGGGGGCCCTGGATTTGGACAAAACA 398 ** * * * * *** * ** ** * * * ** * ** consensus_4367#0 AACGCACTGTTTGTAGCTTCTCCTTTTGATGAAGATTCTGCAGAAATGTT---------- 702 consensus_4367#1 AGCGCGGTACTAGCAGCT---CCTTNTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCT 292 consensus_4367#2 A-CATGGGAATGTTGGGAAACCGGGGGAAGGGAGATTAGGGGAAACTGTTAAAAGTGCGA 457 * * * * * * * ***** * ** **** consensus_4367#0 ------------------------------------------------------------ consensus_4367#1 AGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTG 352 consensus_4367#2 AAAATCCCC--------------------------------------------------- 466 consensus_4367#0 ------------------------------------------------------------ consensus_4367#1 TCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTC 412 consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 ------------------------------------------------------------ consensus_4367#1 AAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAAC 472 consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 ------------------------------------- consensus_4367#1 TGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACC 509 consensus_4367#2 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||