cluster # 4372

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Oryza sativa
cluster # 4372 cluster # 4372 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4372#0 length = 424 sequences # 2

consensus_4372#1 length = 159 sequences # 1

consensusID : consensus_4372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTGCGGGCAACGAAACCCTACCTAACGGGATGACAGGGG-TCTTTTTTTTTTTTTGCTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCTAACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGATGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTTTTTTT]

[+] EMBL CF315746             [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTGCGGGCAACGAAACCCTACCTAACGGGATGACAGGGG TCTTTTTTTTTTTTTGCTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCTAACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGATGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTTTTTTT]
[+] EMBL CF314649             [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGG  TTTTTTTTTTTTTTTTTGCTGGCAACGAAACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCCTCCTAACGGGATGACAGGGGTTTTTT                                                                                                                                                                                                                       ]




>consensus_4372#0
TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTT
GCGGGCAACGAAACCCTACCTAACGGGATGACAGGGGTCTTTTTTTTTTTTTGCTGGCAA
CGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAAC
CCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCTA
ACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGAT
GAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGGG
TTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTTT
TTTT

consensusID : consensus_4372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTGCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT]

[+] EMBL CF314038             [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTGCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT]




>consensus_4372#1
TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTGCTG
GCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACGA
TACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4372#0      TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTT 60
consensus_4372#1      TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTT----T 56
                      *******************************************************    *

consensus_4372#0      GCGGGCAACGAAACCCTACCTAACGGGATGACAGGGGTCTTTTTTTTTTTTT-GCTGGCA 119
consensus_4372#1      GCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCA 116
                      ** ****** * ******* ****** *********** ************* * *****

consensus_4372#0      ACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAA 179
consensus_4372#1      ACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT----------------- 159
                      ************ ******************************                 

consensus_4372#0      CCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCT 239
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      AACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGA 299
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      TGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGG 359
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      GTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTT 419
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      TTTTT 424
consensus_4372#1      -----